Package: SIMAT 1.44.0

M. R. Nezami Ranjbar

SIMAT: GC-SIM-MS data processing and alaysis tool

This package provides a pipeline for analysis of GC-MS data acquired in selected ion monitoring (SIM) mode. The tool also provides a guidance in choosing appropriate fragments for the targets of interest by using an optimization algorithm. This is done by considering overlapping peaks from a provided library by the user.

Authors:M. R. Nezami Ranjbar <[email protected]>

SIMAT_1.44.0.tar.gz
SIMAT_1.44.0.zip(r-4.7)SIMAT_1.44.0.zip(r-4.6)SIMAT_1.44.0.zip(r-4.5)
SIMAT_1.44.0.tgz(r-4.6-any)SIMAT_1.44.0.tgz(r-4.5-any)
SIMAT_1.44.0.tar.gz(r-4.7-any)SIMAT_1.44.0.tar.gz(r-4.6-any)
SIMAT_1.44.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SIMAT/json (API)
NEWS

# Install 'SIMAT' in R:
install.packages('SIMAT', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:
  • Library - Extracted compound information from an MSL library.
  • RItable - Extracted RI standard information from a 'csv' file.
  • Run - Extracted peaks from one SIM run.
  • target.table - Extracted target information from a 'csv' file.
  • Targets - Targets information in a list.

On BioConductor:SIMAT-1.45.0(bioc 3.24)SIMAT-1.44.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologysoftwaremetabolomicsmassspectrometry

4.26 score 2 scripts 376 downloads 9 mentions 16 exports 33 dependencies

Last updated from:6b6a124358 (on RELEASE_3_23). Checks:1 ERROR, 9 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR163
linux-devel-x86_64OK183
source / vignettesOK197
linux-release-x86_64OK207
macos-release-arm64OK158
macos-oldrel-arm64OK133
windows-develOK106
windows-releaseOK86
windows-oldrelOK107
wasm-releaseOK123

Exports:getEICgetPeakgetPeakScoregetRIgetRIStandardgetScoregetTargetgetTargetTableoptFragplotEICplotTICputTargetTablereadCDFreadMSLwriteMSLwriteResult

Dependencies:BiobaseBiocGenericsbiocmakeclicpp11dir.expiryfarverfilelockgenericsggplot2gluegtableisobandlabelinglifecyclemagrittrmzRncdf4plyrProtGenericsR6RColorBrewerRcppreshape2Rhdf5librlangS7scalesstringistringrvctrsviridisLitewithr

SIMAT Usage

Rendered fromSIMAT-vignette.Rnwusingutils::Sweaveon Jun 14 2026.

Last update: 2018-08-03
Started: 2015-03-13