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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SiPSiC" in publications use:'
type: software
title: 'SiPSiC: Calculate Pathway Scores for Each Cell in scRNA-Seq Data'
version: 1.12.0
doi: 10.1101/gr.278431.123
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SiPSiC
abstract: Infer biological pathway activity of cells from single-cell RNA-sequencing
  data by calculating a pathway score for each cell (pathway genes are specified by
  the user). It is recommended to have the data in Transcripts-Per-Million (TPM) or
  Counts-Per-Million (CPM) units for best results. Scores may change when adding cells
  to or removing cells off the data. SiPSiC stands for Single Pathway analysis in
  Single Cells.
authors:
- family-names: Davis
  given-names: Daniel
  email: DanielDavis000@gmail.com
  orcid: https://orcid.org/0000-0001-7863-1521
- family-names: Drier
  given-names: Yotam
preferred-citation:
  type: article
  title: Accurate estimation of pathway activity in single cells for clustering and
    differential analysis
  authors:
  - family-names: Davis
    given-names: Daniel
    email: DanielDavis000@gmail.com
    orcid: https://orcid.org/0000-0001-7863-1521
  - family-names: Wizel
    given-names: Avishai
  - family-names: Drier
    given-names: Yotam
  journal: Genome Research
  year: '2024'
  doi: 10.1101/gr.278431.123
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/DanielDavis12/SiPSiC
commit: 714c03d27fd0d1ef949fadd20d847bf04c4bb77a
url: https://www.genome.org/cgi/doi/10.1101/gr.278431.123
date-released: '2022-12-29'
contact:
- family-names: Davis
  given-names: Daniel
  email: DanielDavis000@gmail.com
  orcid: https://orcid.org/0000-0001-7863-1521