# ------------------------------------------------
# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# ------------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "Single.mTEC.Transcriptomes" in publications use:'
type: software
license: LGPL-2.0-only
title: 'Single.mTEC.Transcriptomes: Single Cell Transcriptome Data and Analysis of
  Mouse mTEC cells'
version: 1.40.0
doi: 10.1038/ni.3246
identifiers:
- type: doi
  value: 10.32614/CRAN.package.Single.mTEC.Transcriptomes
abstract: 'This data package contains the code used to analyse the single-cell RNA-seq
  and the bulk ATAC-seq data from the manuscript titled: Single-cell transcriptome
  analysis reveals coordinated ectopic-gene expression patterns in medullary thymic
  epithelial cells. This paper was published in Nature Immunology 16,933-941(2015).
  The data objects provided in this package has been pre-processed: the raw data files
  can be downloaded from ArrayExpress under the accession identifiers E-MTAB-3346
  and E-MTAB-3624. The vignette of this data package provides a documented and reproducible
  workflow that includes the code that was used to generate each statistic and figure
  from the manuscript.'
authors:
- family-names: Reyes
  given-names: Alejandro
  email: alejandro.reyes.ds@gmail.com
preferred-citation:
  type: article
  title: Single-cell transcriptome analysis reveals coordinated ectopic gene-expression
    patterns in medullary thymic epithelial cells
  authors:
  - family-names: Brennecke
    given-names: Philip
  - family-names: Reyes
    given-names: Alejandro
    email: alejandro.reyes.ds@gmail.com
  - family-names: Pinto
    given-names: Sheena
  - family-names: Rattay
    given-names: Kristin
  - family-names: Nguyen
    given-names: Michelle
  - family-names: Kuechler
    given-names: Rita
  - family-names: Huber
    given-names: Wolfgang
  - family-names: Kyewski
    given-names: Bruno
  - family-names: Steinmetz
    given-names: Lars M.
  year: '2015'
  journal: Nature Immunology
  doi: 10.1038/ni.3246
  volume: '16'
  issue: '9'
  start: '-8'
repository: https://bioconductor.org/
commit: 5e82a36f27cfd60dd2de7754ff2341cfffad32e6
date-released: '2025-07-28'
contact:
- family-names: Reyes
  given-names: Alejandro
  email: alejandro.reyes.ds@gmail.com