Type: Package
Package: SingleCellMultiModal
Title: Integrating Multi-modal Single Cell Experiment datasets
Version: 1.24.0
Authors@R: c(
    person("Marcel", "Ramos", , "marcel.ramos@sph.cuny.edu",
        c("aut", "cre"), c(ORCID = "0000-0002-3242-0582")
    ),
    person("Ricard", "Argelaguet", , "ricard@ebi.ac.uk", "aut"),
    person("Al", "Abadi", , , "ctb"),
    person("Dario", "Righelli", , "dario.righelli@gmail.com", "aut"),
    person("Christophe", "Vanderaa", ,
        "christophe.vanderaa@uclouvain.be", "ctb"),
    person("Kelly", "Eckenrode", , "kelly.eckenrode@sph.cuny.edu", "aut"),
    person("Ludwig", "Geistlinger", ,
        "ludwig_geistlinger@hms.harvard.edu", "aut"),
    person("Levi", "Waldron", , "lwaldron.research@gmail.com", "aut")
    )
Description: SingleCellMultiModal is an ExperimentHub package that
        serves multiple datasets obtained from GEO and other sources
        and represents them as MultiAssayExperiment objects. We provide
        several multi-modal datasets including scNMT, 10X Multiome,
        seqFISH, CITEseq, SCoPE2, and others. The scope of the package
        is is to provide data for benchmarking and analysis. To cite,
        use the 'citation' function and see
        <https://doi.org/10.1371/journal.pcbi.1011324>.
License: Artistic-2.0
BugReports: https://github.com/waldronlab/SingleCellMultiModal/issues
Depends: R (>= 4.2.0), MultiAssayExperiment
Imports: AnnotationHub, BiocBaseUtils, BiocFileCache, ExperimentHub,
        graphics, HDF5Array, S4Vectors, SingleCellExperiment,
        SpatialExperiment, SummarizedExperiment, Matrix, methods, utils
Suggests: BiocStyle, ggplot2, knitr, RaggedExperiment, rmarkdown,
        scater, scran, UpSetR, uwot
VignetteBuilder: knitr
biocViews: ExperimentData, SingleCellData, ReproducibleResearch,
        ExperimentHub, GEO
Encoding: UTF-8
RoxygenNote: 7.3.2
Roxygen: list(markdown = TRUE)
Date: 2025-06-12
Config/pak/sysreqs: libmagick++-dev gsfonts libicu-dev libpng-dev
        libssl-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:34:10 UTC
RemoteUrl: https://github.com/bioc/SingleCellMultiModal
RemoteRef: RELEASE_3_23
RemoteSha: 57a99457f4bf06fa34eb7f12dbeb9f47468b54df
NeedsCompilation: no
Packaged: 2026-10-10 11:17:48 UTC; root
Author: Marcel Ramos [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-3242-0582>),
  Ricard Argelaguet [aut],
  Al Abadi [ctb],
  Dario Righelli [aut],
  Christophe Vanderaa [ctb],
  Kelly Eckenrode [aut],
  Ludwig Geistlinger [aut],
  Levi Waldron [aut]
Maintainer: Marcel Ramos <marcel.ramos@sph.cuny.edu>