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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SingleCellSignalR" in publications use:'
type: software
license: CECILL-1.0
title: 'SingleCellSignalR: Cell Signalling Using Single-Cell RNA-seq or Proteomics
  Data'
version: 2.2.0
doi: 10.1093/nar/gkaa183
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SingleCellSignalR
abstract: Inference of ligand-receptor (L-R) interactions from single-cell expression
  (transcriptomics/proteomics) data. SingleCellSignalR v2 inferences rely on the statistical
  model we introduced in the BulkSignalR package as well as the original SingleCellSignalR
  LR-score (both are available). SingleCellSignalR v2 can be regarded as a wrapper
  to BulkSignalR fundamental classes. This also enables v2 users to work with any
  species, whereas only Mus musculus & Homo sapiens were available before in SingleCellSignalR
  v1.
authors:
- family-names: Colinge
  given-names: Jacques
  email: jacques.colinge@inserm.fr
  orcid: https://orcid.org/0000-0003-2466-4824
- family-names: Villemin
  given-names: Jean-Philippe
  email: jpvillemin@gmail.com
  orcid: https://orcid.org/0000-0002-1838-5880
preferred-citation:
  type: article
  title: 'SingleCellSignalR: inference of intercellular networks from single-cell
    transcriptomics'
  authors:
  - family-names: Cabello-Aguilar
    given-names: Simon
  - family-names: Alame
    given-names: Melissa
  - family-names: Kon-Sun-Tack
    given-names: Fabien
  - family-names: Fau
    given-names: Caroline
  - family-names: Lacroix
    given-names: Matthieu
  - family-names: Colinge
    given-names: Jacques
    email: jacques.colinge@inserm.fr
    orcid: https://orcid.org/0000-0003-2466-4824
  year: '2020'
  journal: Nucleic Acids Res
  volume: '48'
  issue: '10'
  doi: 10.1093/nar/gkaa183
  start: e55
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/jcolinge/SingleCellSignalR
commit: bd9d2b86be1550da23bb602f9930b0620fad2ae8
url: https://github.com/jcolinge/SingleCellSignalR
date-released: '2026-04-28'
contact:
- family-names: Villemin
  given-names: Jean-Philippe
  email: jpvillemin@gmail.com
  orcid: https://orcid.org/0000-0002-1838-5880