Package 'SomatiCAData'

Title: An example cancer whole genome sequencing data for the SomatiCA package
Description: An example cancer whole genome sequencing data for the SomatiCA package
Authors: Mengjie Chen
Maintainer: Mengjie Chen <[email protected]>
License: Artistic-2.0
Version: 1.50.0
Built: 2026-10-10 11:04:34 UTC
Source: https://github.com/bioc/SomatiCAData

Help Index


An example cancer whole genome sequencing data for the SomatiCA package

Description

A dataset of a paired tumor-normal sequencing sample from Complete Genomics.

Author(s)

Mengjie Chen <[email protected]>

Maintainer: Mengjie Chen <[email protected]>

Examples

data(glio)

Sequencing data for a tumor sample with control.

Description

A dataset of a paired tumor-normal sequencing sample from Complete Genomics.

Usage

data(glio)

Format

A data frame with 3458745 rows on the following 7 variables.

seqnames

a character vector

start

a character vector

zygosity

a character vector

tCount

an integer vector

LAF

a numeric vector

tCountN

an integer vector

germLAF

a numeric vector