Package: SpatialCPie 1.28.0

Joseph Bergenstraahle

SpatialCPie: Cluster analysis of Spatial Transcriptomics data

SpatialCPie is an R package designed to facilitate cluster evaluation for spatial transcriptomics data by providing intuitive visualizations that display the relationships between clusters in order to guide the user during cluster identification and other downstream applications. The package is built around a shiny "gadget" to allow the exploration of the data with multiple plots in parallel and an interactive UI. The user can easily toggle between different cluster resolutions in order to choose the most appropriate visual cues.

Authors:Joseph Bergenstraahle [aut, cre]

SpatialCPie_1.28.0.tar.gz
SpatialCPie_1.28.0.zip(r-4.7)SpatialCPie_1.28.0.zip(r-4.6)SpatialCPie_1.28.0.zip(r-4.5)
SpatialCPie_1.28.0.tgz(r-4.6-any)SpatialCPie_1.28.0.tgz(r-4.5-any)
SpatialCPie_1.28.0.tar.gz(r-4.7-any)SpatialCPie_1.28.0.tar.gz(r-4.6-any)
SpatialCPie_1.28.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SpatialCPie/json (API)
NEWS

# Install 'SpatialCPie' in R:
install.packages('SpatialCPie', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:SpatialCPie-1.29.0(bioc 3.24)SpatialCPie-1.28.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

transcriptomicsclusteringrnaseqsoftware

4.30 score 2 scripts 416 downloads 2 mentions 2 exports 105 dependencies

Last updated from:0234b14f0b (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE196
linux-devel-x86_64NOTE295
source / vignettesOK282
linux-release-x86_64NOTE348
macos-release-arm64NOTE193
macos-oldrel-arm64NOTE178
windows-develNOTE553
windows-releaseNOTE200
windows-oldrelNOTE561
wasm-releaseOK149

Exports:parseSpotFilerunCPie

Dependencies:abindbase64encBiobaseBiocGenericsbitbit64bslibcachemclicliprcolorspacecommonmarkcpp11crayondata.tableDelayedArraydigestdplyrevaluatefarverfastmapfontawesomefontBitstreamVerafontLiberationfontquiverfsgdtoolsgenericsGenomicRangesggforceggiraphggplot2ggrepelgluegtablehighrhmshtmltoolshtmlwidgetshttpuvigraphIRangesisobandjquerylibjsonliteknitrlabelinglaterlatticelifecyclelpSolvemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoisemimeotelpillarpkgconfigpolyclipprettyunitsprogresspromisespurrrR6rappdirsRColorBrewerRcppreadrrlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfoshinyshinycssloadersshinyjsshinyWidgetssourcetoolsSparseArraystringistringrSummarizedExperimentsystemfontstibbletidyrtidyselecttinytextweenrtzdbutf8vctrsviridisLitevroomwithrxfunxtableXVectoryamlzeallot

Spatial transcriptomics cluster analysis with SpatialCPie

Joseph Bergenstråhle, Ludvig Bergenstråhle, Joakim Lundeberg

Rendered fromSpatialCPie.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-03-31
Started: 2018-08-17