# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "SpliceImpactR" in publications use:'
type: software
license: GPL-3.0-only
title: 'SpliceImpactR: An R package to identify functional impacts due to alternative
  RNA processing events'
version: 1.0.0
doi: 10.1101/2025.06.20.660706
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SpliceImpactR
abstract: Works by taking in processed data from the HIT Index and/or rMATS and identifying
  how differentially used alternative RNA processing events lead to changes in protein
  function through various means. Primarily this is done through protein similarity,
  functional protein domain analysis, and domain-domain interaction changes. Notably,
  we both identify alterantive RNA processing event 'swaps' across condition and are
  able to perform holistic analyses regarding the impact of different RNA processing
  events.
authors:
- family-names: Wakefield
  given-names: Zachary
  email: zachpw@bu.edu
  orcid: https://orcid.org/0000-0002-9104-0934
- family-names: Fiszbein
  given-names: Ana
  email: anafisz@bu.edu
preferred-citation:
  type: article
  title: SpliceImpactR maps alternative RNA processing events driving protein functional
    diversity
  authors:
  - family-names: Wakefield
    given-names: Zachary Peters
  - family-names: Fiszbein
    given-names: Ana
    email: anafisz@bu.edu
  year: '2025'
  journal: bioRxiv
  doi: 10.1101/2025.06.20.660706
  url: https://www.biorxiv.org/content/10.1101/2025.06.20.660706v1
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/fiszbein-lab/SpliceImpactR
commit: c3b74ba3e43a73357f1b3b84e8e40d7a1c3144c8
url: https://github.com/fiszbein-lab/SpliceImpactR
date-released: '2026-04-28'
contact:
- family-names: Wakefield
  given-names: Zachary
  email: zachpw@bu.edu
  orcid: https://orcid.org/0000-0002-9104-0934