Package: StabMap
Type: Package
Title: Stabilised mosaic single cell data integration using unshared
        features
Version: 1.6.0
Authors@R: c(
    person("Shila", "Ghazanfar", , "shazanfar@gmail.com", role = c("aut", "cre", "ctb")),
    person("Aiden", "Jin", role = "ctb"),
    person("Nicholas", "Robertson", , "nicholas.robertson@sydney.edu.au", role = "ctb")
  )
Description: StabMap performs single cell mosaic data integration by
        first building a mosaic data topology, and for each reference
        dataset, traverses the topology to project and predict data
        onto a common embedding. Mosaic data should be provided in a
        list format, with all relevant features included in the data
        matrices within each list object. The output of stabMap is a
        joint low-dimensional embedding taking into account all
        available relevant features. Expression imputation can also be
        performed using the StabMap embedding and any of the original
        data matrices for given reference and query cell lists.
License: GPL-2
Encoding: UTF-8
URL: https://sydneybiox.github.io/StabMap,
        https://sydneybiox.github.io/StabMap/
BugReports: https://github.com/sydneybiox/StabMap/issues
biocViews: SingleCell, DimensionReduction, Software
Depends: R (>= 4.4.0),
Imports: igraph, slam, BiocNeighbors, Matrix, MASS, abind,
        SummarizedExperiment, methods, MatrixGenerics, BiocGenerics,
        BiocSingular, BiocParallel
Suggests: scran, scater, knitr, UpSetR, gridExtra,
        SingleCellMultiModal, BiocStyle, magrittr, testthat (>= 3.0.0),
        purrr, sparseMatrixStats
RoxygenNote: 7.3.2
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/pak/sysreqs: libglpk-dev libxml2-dev zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 13:03:28 UTC
RemoteUrl: https://github.com/bioc/StabMap
RemoteRef: RELEASE_3_23
RemoteSha: 2c983548d049d33966b014d142a74b45bc058aab
NeedsCompilation: no
Packaged: 2026-10-16 08:08:12 UTC; root
Author: Shila Ghazanfar [aut, cre, ctb],
  Aiden Jin [ctb],
  Nicholas Robertson [ctb]
Maintainer: Shila Ghazanfar <shazanfar@gmail.com>