Package: StatescopeR 1.0.1

Mischa Steketee

StatescopeR: StatescopeR framework for discovery of cell states from cell type-specific gene expression profiles inferred from bulk mRNA profiles

StatescopeR is an R wrapper around Statescope, a computational framework designed to discover cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.

Authors:Mischa Steketee [aut, cre], Bauke Ylstra [ths], Yongsoo Kim [ths], KWF Kankerbestrijding [fnd]

StatescopeR_1.0.1.tar.gz
StatescopeR_1.0.1.zip(r-4.7)StatescopeR_1.0.1.zip(r-4.6)StatescopeR_1.0.1.zip(r-4.5)
StatescopeR_1.0.1.tgz(r-4.6-any)StatescopeR_1.0.1.tgz(r-4.5-any)
StatescopeR_1.0.1.tar.gz(r-4.7-any)StatescopeR_1.0.1.tar.gz(r-4.6-any)
StatescopeR_1.0.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
StatescopeR/json (API)
NEWS

# Install 'StatescopeR' in R:
install.packages('StatescopeR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tgac-vumc/statescoper/issues

On BioConductor:StatescopeR-1.1.0(bioc 3.24)StatescopeR-1.0.1(bioc 3.23)

geneexpressionrnaseqsinglecellbayesiantranscriptomicssoftware

4.93 score 4 scripts 26 downloads 10 exports 89 dependencies

Last updated from:34f00af248 (on RELEASE_3_23). Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE238
linux-devel-x86_64WARNING1348
source / vignettesOK1647
linux-release-x86_64WARNING1389
macos-release-arm64WARNING754
macos-oldrel-arm64WARNING745
windows-develWARNING1430
windows-releaseWARNING1385
windows-oldrelWARNING1787
wasm-releaseOK204

Exports:barplot_stateloadingsBLADE_deconvolutioncreate_signaturefetch_signaturefraction_evalfraction_heatmapgather_true_fractionsRefinementselect_genesStateDiscovery

Dependencies:abindassortheadbasiliskbeachmatBHBiobaseBiocGenericsBiocNeighborsBiocParallelBiocSingularblustercirclizecliclueclustercodetoolscolorspaceComplexHeatmapcowplotcpp11crayonDelayedArraydigestdir.expirydoParalleldqrngedgeRfarverfilelockforeachformatRfutile.loggerfutile.optionsgenericsGenomicRangesGetoptLongggplot2GlobalOptionsgluegtablehereigraphIRangesirlbaisobanditeratorsjsonlitelabelinglambda.rlatticelifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmetapodpkgconfigpngR6rappdirsRColorBrewerRcppRcppTOMLreticulaterjsonrlangrprojrootrsvdS4ArraysS4VectorsS7ScaledMatrixscalesscranscuttleSeqinfoshapeSingleCellExperimentsitmosnowSparseArraystatmodSummarizedExperimentvctrsviridisLitewithrXVector

Introduction to StatescopeR

Mischa Steketee, Yongsoo Kim

Rendered fromStatescopeR.Rmdusingknitr::rmarkdownon May 24 2026.

Last update: 2026-05-20
Started: 2025-05-07