Package: StatescopeR 1.0.2

Mischa Steketee

StatescopeR: StatescopeR framework for discovery of cell states from cell type-specific gene expression profiles inferred from bulk mRNA profiles

StatescopeR is an R wrapper around Statescope, a computational framework designed to discover cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.

Authors:Mischa Steketee [aut, cre], Bauke Ylstra [ths], Yongsoo Kim [ths], KWF Kankerbestrijding [fnd]

StatescopeR_1.0.2.tar.gz
StatescopeR_1.0.2.zip(r-4.7-any)StatescopeR_1.0.2.zip(r-4.6-any)StatescopeR_1.0.2.zip(r-4.5-any)
StatescopeR_1.0.2.tgz(r-4.6-any)StatescopeR_1.0.1.tgz(r-4.5-any)
StatescopeR_1.0.2.tar.gz(r-4.7-any)StatescopeR_1.0.2.tar.gz(r-4.6-any)
StatescopeR_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
StatescopeR/json (API)

# Install 'StatescopeR' in R:
install.packages('StatescopeR', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tgac-vumc/statescoper/issues

On BioConductor:StatescopeR-1.1.0(bioc 3.24)StatescopeR-1.0.2(bioc 3.23)

geneexpressionrnaseqsinglecellbayesiantranscriptomicssoftware

3.78 score 4 scripts 214 downloads 10 exports 68 dependencies

Last updated from:b486cf61c3 (on RELEASE_3_23). Checks:5 WARNING, 3 ERROR, 1 FAIL, 1 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING197
linux-develERROR1238
source / vignettesERROR1258
linux-releaseERROR1372
macos-releaseWARNING1234
macos-oldrelFAIL191
windows-develWARNING1718
windows-releaseWARNING1501
windows-oldrelWARNING1708
wasm-releaseOK169

Exports:barplot_stateloadingsBLADE_deconvolutioncreate_signaturefetch_signaturefraction_evalfraction_heatmapgather_true_fractionsRefinementselect_genesStateDiscovery

Dependencies:abindassortheadbasiliskbeachmatBiobaseBiocGenericsbiocmakeBiocNeighborscirclizecliclueclustercodetoolscolorspaceComplexHeatmapcowplotcpp11crayonDelayedArraydigestdir.expirydoParallelfarverfilelockforeachgenericsGenomicRangesGetoptLongggplot2GlobalOptionsgluegtablehereIRangesisobanditeratorsjsonlitelabelinglatticelifecycleMatrixMatrixGenericsmatrixStatspngR6rappdirsRColorBrewerRcppRcppTOMLreticulateRigraphlibrjsonrlangrprojrootS4ArraysS4VectorsS7scalesscrapperSeqinfoshapeSingleCellExperimentSparseArraySummarizedExperimentvctrsviridisLitewithrXVector