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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "Structstrings" in publications use:'
type: software
license: Artistic-2.0
title: 'Structstrings: Implementation of the dot bracket annotations with Biostrings'
version: 1.28.0
doi: 10.32614/CRAN.package.Structstrings
abstract: The Structstrings package implements the widely used dot bracket annotation
  for storing base pairing information in structured RNA. Structstrings uses the infrastructure
  provided by the Biostrings package and derives the DotBracketString and related
  classes from the BString class. From these, base pair tables can be produced for
  in depth analysis. In addition, the loop indices of the base pairs can be retrieved
  as well. For better efficiency, information conversion is implemented in C, inspired
  to a large extend by the ViennaRNA package.
authors:
- family-names: Ernst
  given-names: Felix G.M.
  email: felix.gm.ernst@outlook.com
  orcid: https://orcid.org/0000-0001-5064-0928
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/FelixErnst/Structstrings
commit: 38d447a0669aca6ce85f44eb4890234933f1a2f2
url: https://github.com/FelixErnst/Structstrings
date-released: '2025-09-22'
contact:
- family-names: Ernst
  given-names: Felix G.M.
  email: felix.gm.ernst@outlook.com
  orcid: https://orcid.org/0000-0001-5064-0928