Package: StructuralVariantAnnotation
Type: Package
Title: Variant annotations for structural variants
Version: 1.28.0
Date: 2024-04-23
Authors@R: c(
	person("Daniel", "Cameron", email="daniel.l.cameron@gmail.com", role=c("aut", "cre"), comment=c(ORCID = "0000-0002-0951-7116")),
	person("Ruining", "Dong", role=c("aut"), comment=c(ORCID = "0000-0003-1433-0484")))
Description: StructuralVariantAnnotation provides a framework for
        analysis of structural variants within the Bioconductor
        ecosystem. This package contains contains useful helper
        functions for dealing with structural variants in VCF format.
        The packages contains functions for parsing VCFs from a number
        of popular callers as well as functions for dealing with
        breakpoints involving two separate genomic loci encoded as
        GRanges objects.
License: GPL-3 + file LICENSE
Depends: GenomicRanges, rtracklayer, VariantAnnotation, BiocGenerics, R
        (>= 4.1.0)
Imports: assertthat, Biostrings, pwalign, stringr, dplyr, methods,
        rlang, GenomicFeatures, IRanges, S4Vectors,
        SummarizedExperiment, GenomeInfoDb,
Suggests: ggplot2, devtools, testthat (>= 2.1.0), roxygen2, rmarkdown,
        tidyverse, knitr, ggbio, biovizBase,
        TxDb.Hsapiens.UCSC.hg19.knownGene, BSgenome.Hsapiens.UCSC.hg19,
RoxygenNote: 7.1.1
Encoding: UTF-8
VignetteBuilder: knitr
biocViews: DataImport, Sequencing, Annotation, Genetics,
        VariantAnnotation
Config/pak/sysreqs: make libbz2-dev libicu-dev liblzma-dev libpng-dev
        libxml2-dev libssl-dev xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:50:18 UTC
RemoteUrl: https://github.com/bioc/StructuralVariantAnnotation
RemoteRef: RELEASE_3_23
RemoteSha: 1fb83fe95c61efd2058f89d08d6bc1004dab460f
NeedsCompilation: no
Packaged: 2026-11-06 13:47:46 UTC; root
Author: Daniel Cameron [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-0951-7116>),
  Ruining Dong [aut] (ORCID: <https://orcid.org/0000-0003-1433-0484>)
Maintainer: Daniel Cameron <daniel.l.cameron@gmail.com>