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# CITATION.cff file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SubcellularSpatialData" in publications use:'
type: software
license: GPL-3.0-or-later
title: 'SubcellularSpatialData: Annotated spatial transcriptomics datasets from 10x
  Xenium, NanoString CosMx and BGI STOmics.'
version: 1.8.0
doi: 10.1186/s13059-024-03241-7
identifiers:
- type: doi
  value: 10.32614/CRAN.package.SubcellularSpatialData
abstract: This is a data package that hosts annotated sub-cellular localised datasets
  from the STOmics, Xenium and CosMx platforms. Specifically, it hosts datasets analysed
  in the publication Bhuva et. al, 2024 titled "Library size confounds biology in
  spatial transcriptomics data". Raw transcript detections are hosted and functions
  to convert them to SpatialExperiment objects have been implemented.
authors:
- family-names: Bhuva
  given-names: Dharmesh D.
  email: dharmesh.bhuva@adelaide.edu.au
  orcid: https://orcid.org/0000-0002-6398-9157
preferred-citation:
  type: article
  title: Library size confounds biology in spatial transcriptomics data
  authors:
  - family-names: Bhuva
    given-names: Dharmesh D
  - family-names: Tan
    given-names: Chin Wee
  - family-names: Salim
    given-names: Agus
  - family-names: Marceaux
    given-names: Claire
  - family-names: Pickering
    given-names: Marie A
  - family-names: Chen
    given-names: Jinjin
  - family-names: Kharbanda
    given-names: Malvika
  - family-names: Jin
    given-names: Xinyi
  - family-names: Liu
    given-names: Ning
  - family-names: Feher
    given-names: Kristen
  - family-names: Putri
    given-names: Givanna
  - family-names: Tilley
    given-names: Wayne D
  - family-names: Hickey
    given-names: Theresa E
  - family-names: Asselin-Labat
    given-names: Marie-Liesse
  - family-names: Phipson
    given-names: Belinda
  - family-names: Davis
    given-names: Melissa J
  journal: Genome Biology
  year: '2024'
  volume: '25'
  issue: '1'
  publisher:
    name: Springer
  doi: 10.1186/s13059-024-03241-7
  start: '99'
repository: https://bioconductor.org/
repository-code: https://github.com/DavisLaboratory/SubcellularSpatialData
commit: 7ec55d259b50cc903d346b773bf1108b9c7c877d
url: https://davislaboratory.github.io/SubcellularSpatialData
date-released: '2026-04-28'
contact:
- family-names: Bhuva
  given-names: Dharmesh D.
  email: dharmesh.bhuva@adelaide.edu.au
  orcid: https://orcid.org/0000-0002-6398-9157