| Title: | Subset of BAM files from the "TBX20" experiment |
|---|---|
| Description: | Dual transcriptional activator and repressor roles of TBX20 regulate adult cardiac structure and function. A subset of the RNA-Seq data. |
| Authors: | D. Bindreither |
| Maintainer: | D. Bindreither <[email protected]> |
| License: | LGPL |
| Version: | 1.48.0 |
| Built: | 2026-10-10 11:04:21 UTC |
| Source: | https://github.com/bioc/TBX20BamSubset |
The package contains 6 subset of BAM files from the TBX20 RNA-Seq experiment.
The TBX20 data set basically provides ChIP-Seq and RNA-Seq data. In here only the RNA-Seq part of the data is utilized. TBX20 (T-box 20) is a transcriptional regulator essential for cardiac development and maintenance of mouse heart tissue. In this study TXB20 was knocked out by using a Tamoxifen mediated conditional knock-out system. Transcriptional changes caused by the ablation of the second exon of TBX20 result in rapid onset of heart failures and the subsequent death of the mice. TBX20 knock-out adult heart tissue was compared to wild type adult heart tissue. The associated RNA-Seq raw data can be retrieved by the following code chunk.
Noboru J. Sakabe, Ivy Aneas, Tao Shen, Leila Shokri, Soo-Young Park, Martha L. Bulyk, Sylvia M. Evans and Marcelo A. Nobrega Human Molecular Genetics Date: Feb 2012 Dual transcriptional activator and repressor roles of TBX20 regulateadult cardiac structure and function
bfs <- getBamFileList()bfs <- getBamFileList()
Retrieves the file paths for accessing the data of the
TBX20BamSubset package.
getBamFileList(...)getBamFileList(...)
... |
Arguments to be passed to or from methods. |
Accessory function to the BAM files of the TBX20BamSubset
package.
Returns a named character vector pointing to the BAM files included in
TBX20BamSubset package.
D. Bindreither
bfl <- getBamFileList() bflbfl <- getBamFileList() bfl