[
  {
    "title": "TCC: an R package for comparing tag count data with robust normalization strategies",
    "author": [
      {
        "given": "Sun",
        "family": "J",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Nishiyama",
        "family": "T",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Shimizu",
        "family": "K",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Kadota",
        "family": "K",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "BMC Bioinformatics",
    "volume": "14",
    "pages": "219",
    "year": "2013"
  },
  {
    "title": "A normalization strategy for comparing tag count data",
    "author": [
      {
        "given": "Kadota",
        "family": "K",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Nishiyama",
        "family": "T",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Shimizu",
        "family": "K",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "Algorithms for Molecular Biology",
    "volume": "7",
    "pages": "5",
    "year": "2012"
  },
  {
    "title": "A scaling normalization method for differential expression analysis of RNA-seq data",
    "author": [
      {
        "given": "Robinson",
        "family": "MD",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Oshlack",
        "family": "A",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "Genome Biology",
    "volume": "11",
    "pages": "R25",
    "year": "2010"
  },
  {
    "title": "A weighted average difference method for detecting differentially expressed genes from microarray data",
    "author": [
      {
        "given": "Kadota",
        "family": "K",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Nakai",
        "family": "Y",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Shimizu",
        "family": "K",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "Algorithms Mol Biol.",
    "volume": "3",
    "pages": "8",
    "year": "2008"
  },
  {
    "title": "baySeq: empirical Bayesian methods for identifying differential expression in sequence count data",
    "author": [
      {
        "given": "Hardcastle",
        "family": "TJ",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Kelly",
        "family": "KA",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "BMC Bioinformatics",
    "volume": "11",
    "pages": "422",
    "year": "2010"
  },
  {
    "title": "Detection of genes with tissue-specific expression patterns using Akaike's Information Criterion (AIC) procedure",
    "author": [
      {
        "given": "Kadota",
        "family": "K",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Nishimura",
        "family": "SI",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Bono",
        "family": "H",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Nakamura",
        "family": "S",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Hayashizaki",
        "family": "Y",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Okazaki",
        "family": "Y",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Takahashi",
        "family": "K",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "Physiol Genomics",
    "volume": "12",
    "pages": "-8",
    "year": "2003"
  },
  {
    "title": "Differential expression analysis for sequence count data",
    "author": [
      {
        "given": "Anders",
        "family": "S",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Huber",
        "family": "W",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "Genome Biology",
    "volume": "11(10)",
    "pages": "R106",
    "year": "2010"
  },
  {
    "title": "Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation",
    "author": [
      {
        "given": "McCarthy",
        "family": "DJ",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Chen",
        "family": "Y",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Smyth",
        "family": "GK",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "Nucleic Acids Research",
    "volume": "40",
    "pages": "-9",
    "year": "2012"
  },
  {
    "title": "edgeR: a Bioconductor package for differential expression analysis of digital gene expression data",
    "author": [
      {
        "given": "Robinson",
        "family": "MD",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "McCarthy",
        "family": "DJ",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Smyth",
        "family": "GK",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "Bioinformatics",
    "volume": "26(1)",
    "pages": "-1",
    "year": "2010"
  },
  {
    "title": "ROKU: a novel method for identification of tissue-specific genes",
    "author": [
      {
        "given": "Kadota",
        "family": "K",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Ye",
        "family": "J",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Nakai",
        "family": "Y",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Terada",
        "family": "T",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Shimizu",
        "family": "K",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "BMC Bioinformatics",
    "volume": "7",
    "pages": "294",
    "year": "2006"
  },
  {
    "title": "Simple method for the detection of outliers",
    "author": [
      {
        "given": "Ueda",
        "family": "T",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "Japanese J Appl Stat",
    "volume": "25",
    "pages": "-9",
    "year": "1996"
  },
  {
    "title": "Small-sample estimation of negative binomial dispersion, with applications to SAGE data",
    "author": [
      {
        "given": "Robinson",
        "family": "MD",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Smyth",
        "family": "GK",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "Biostatistics",
    "volume": "9",
    "pages": "-11",
    "year": "2008"
  },
  {
    "title": "The NBP negative binomial model for assessing differential gene expression from RNA-Seq",
    "author": [
      {
        "given": "Di",
        "family": "Y",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Schafer",
        "family": "DW",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Cumbie",
        "family": "JS",
        "role": {},
        "email": {},
        "comment": {}
      },
      {
        "given": "Chang",
        "family": "JH",
        "role": {},
        "email": {},
        "comment": {}
      }
    ],
    "journal": "Stat Appl Genet Mol Biol",
    "volume": "26(1)",
    "pages": "-1",
    "year": "2010"
  }
]
