Package: TENxBrainData 1.32.0

Bioconductor Package Maintainer

TENxBrainData: Data from the 10X 1.3 Million Brain Cell Study

Single-cell RNA-seq data for 1.3 million brain cells from E18 mice, generated by 10X Genomics.

Authors:Aaron Lun [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

TENxBrainData_1.32.0.tar.gz
TENxBrainData_1.32.0.tar.gz(r-4.7-any)TENxBrainData_1.32.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
TENxBrainData/json (API)

# Install 'TENxBrainData' in R:

install.packages('TENxBrainData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:TENxBrainData-1.33.0(data/experiment 3.24)TENxBrainData-1.32.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

sequencingdata rnaseqdata expressiondata singlecelldata datapkg

5.43 score 1 packages 89 scripts 2 exports 75 dependencies

Last updated from:86c66ffd49 (on RELEASE_3_23). Checks:1 NOTE, 3 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time	Files	Syslog
bioc-checks	NOTE	169
linux-devel	OK	366
source / vignettes	OK	391
linux-release	OK	418

Exports:TENxBrainData TENxBrainData20k

Dependencies:abind AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics biocmake BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr DelayedArray dir.expiry dplyr ExperimentHub fastmap filelock generics GenomicRanges glue h5mread HDF5Array httr httr2 IRanges jsonlite KEGGREST lattice lifecycle magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs rhdf5 rhdf5filters Rhdf5lib rlang RSQLite S4Arrays S4Vectors Seqinfo SingleCellExperiment SparseArray stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

Exploring the 1.3 million brain cell scRNA-seq data from 10X Genomics

Initial work flow | Loading the data | Exploring the data | Saving computations | Improving computational performance | Parallel computation | Working with Rle-compressed HDF5 data | Session information

Rendered fromTENxBrainData.Rmdusingknitr::rmarkdown

Last update: 2018-01-05
Started: 2017-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
10X Brain Data	TENxBrainData TENxBrainData20k

Usage by other packages (reverse dependencies)