| Title: | Collection of Xenium spatial data by 10X genomics |
|---|---|
| Description: | Collection of Xenium spatial transcriptomics datasets provided by 10x Genomics, formatted into the Bioconductor classes, the SpatialExperiment or SpatialFeatureExperiment (SFE), to facilitate seamless integration into various applications, including examples, demonstrations, and tutorials. The constructed data objects include gene expression profiles, per-transcript location data, centroid, segmentation boundaries (e.g., cell or nucleus boundaries), and image. |
| Authors: | Matineh Rahmatbakhsh [aut, cre], Monica Ge [aut] |
| Maintainer: | Matineh Rahmatbakhsh <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 1.8.0 |
| Built: | 2026-10-10 11:18:54 UTC |
| Source: | https://github.com/bioc/TENxXeniumData |
Collection of Xenium spatial transcriptomics datasets from 10X Genomics, formatted into the Bioconductor classes, the SpatialExperiment or SpatialFeatureExperiment (SFE). Such Datasets can be used as examples in packages, tutorials, or for testing purposes.
The following Xenium Spatial Transcriptomics datasets by 10X Genomics are currently available:
spe_mouse_brain
sfe_mouse_brain
spe_human_pancreas
sfe_human_pancreas
a SpatialExperiment or
a SpatialFeatureExperiment data objects.
Matineh Rahmatbakhsh
# initialize hub instance eh <- ExperimentHub() # query for TENxXenium datasets (q <- query(eh, "TENxXenium"))# initialize hub instance eh <- ExperimentHub() # query for TENxXenium datasets (q <- query(eh, "TENxXenium"))