# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "TFEA.ChIP" in publications use:'
type: software
license: Artistic-2.0
title: 'TFEA.ChIP: TFEA.ChIP, a Tool Kit for Transcription Factor Enrichment'
version: 1.32.0
doi: 10.1101/2025.07.28.667192
identifiers:
- type: doi
  value: 10.32614/CRAN.package.TFEA.ChIP
abstract: Package to analyze transcription factor enrichment in a gene set using data
  from ChIP-Seq experiments.
authors:
- family-names: Berrouayel
  given-names: Yosra
  email: yosraberrouayel@gmail.com
  orcid: https://orcid.org/0000-0002-0768-5933
- family-names: Puente-Santamaria
  given-names: Laura
  email: laura.puentes@estudiante.uam.es
- family-names: Peso
  given-names: Luis
  name-particle: del
  email: lpeso@iib.uam.es
  orcid: https://orcid.org/0000-0003-4014-5688
preferred-citation:
  type: article
  title: Enhancing TFEA.ChIP with ENCODE Regulatory Maps for Generalizable Transcription
    Factor Enrichment
  authors:
  - family-names: Berrouayel
    given-names: Yosra
    email: yosraberrouayel@gmail.com
    orcid: https://orcid.org/0000-0002-0768-5933
  - family-names: Peso
    given-names: Luis
    name-particle: del
    email: lpeso@iib.uam.es
    orcid: https://orcid.org/0000-0003-4014-5688
  journal: bioRxiv
  year: '2025'
  month: '7'
  url: https://doi.org/10.1101/2025.07.28.667192
  doi: 10.1101/2025.07.28.667192
repository: https://bioc-release.r-universe.dev
repository-code: https://github.com/yberda/TFEA.ChIP
commit: 2ec420fb0cc0b5208d875133c126a206f4996e5d
url: https://github.com/yberda/TFEA.ChIP
date-released: '2026-04-28'
contact:
- family-names: Berrouayel
  given-names: Yosra
  email: yosraberrouayel@gmail.com
  orcid: https://orcid.org/0000-0002-0768-5933