Package: TileDBArray 1.22.0

Aaron Lun

TileDBArray: Using TileDB as a DelayedArray Backend

Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Authors:Aaron Lun [aut, cre], Genentech, Inc. [cph]

TileDBArray_1.22.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
TileDBArray/json (API)
NEWS

# Install 'TileDBArray' in R:
install.packages('TileDBArray', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ltla/tiledbarray/issues

On BioConductor:TileDBArray-1.23.0(bioc 3.24)TileDBArray-1.22.0(bioc 3.23)

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6.95 score 11 stars 1 packages 27 scripts 359 downloads 30 exports 25 dependencies

Last updated from:8346be1573 (on RELEASE_3_23). Checks:1 WARNING, 7 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksWARNING153
linux-devel-x86_64NOTE313
source / vignettesOK244
linux-release-x86_64NOTE300
macos-release-arm64NOTE143
macos-oldrel-arm64NOTE174
windows-develNOTE164
windows-releaseNOTE206
windows-oldrelNOTE191
wasm-releaseOK140

Exports:chunkdimDelayedArrayextract_arrayextract_sparse_arraygetTileDBAttrgetTileDBCapacitygetTileDBCellOrdergetTileDBContextgetTileDBDimTypegetTileDBExtentgetTileDBPathgetTileDBTileOrderis_sparsematrixClasspathsetTileDBAttrsetTileDBCapacitysetTileDBCellOrdersetTileDBContextsetTileDBDimTypesetTileDBExtentsetTileDBPathsetTileDBTileOrdershowTileDBArrayTileDBArraySeedTileDBRealizationSinktypewrite_blockwriteTileDBArray

Dependencies:abindBiocGenericsbitbit64DelayedArraygenericsIRangeslatticeMatrixMatrixGenericsmatrixStatsnanoarrownanotimeRcppRcppCCTZRcppDateRcppInt64RcppSpdlogS4ArraysS4VectorsSparseArrayspdltiledbXVectorzoo

A DelayedArray backend for TileDB

Aaron Lun

Rendered fromuserguide.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2020-06-12
Started: 2020-05-14

Readme and manuals

Help Manual

Help pageTopics
Delayed TileDB arrayschunkdim,TileDBArraySeed-method DelayedArray,TileDBArraySeed-method extract_array,TileDBArraySeed-method extract_sparse_array,TileDBArraySeed-method is_sparse,TileDBArraySeed-method matrixClass,TileDBArray-method path,TileDBArraySeed-method show,TileDBArraySeed-method TileDBArray TileDBArray-class TileDBArraySeed TileDBArraySeed-class TileDBMatrix TileDBMatrix-class type,TileDBArraySeed-method
TileDBArray global optionsgetTileDBAttr getTileDBCapacity getTileDBCellOrder getTileDBContext getTileDBDimType getTileDBExtent getTileDBPath getTileDBTileOrder setTileDBAttr setTileDBCapacity setTileDBCellOrder setTileDBContext setTileDBDimType setTileDBExtent setTileDBPath setTileDBTileOrder TileDBArray-globals
The 'TileDBArray' packageTileDBArray-pkg
Write arrays to TileDBcoerce,ANY,TileDBArray-method coerce,ANY,TileDBMatrix-method coerce,ANY,TileDBRealizationSink-method coerce,TileDBRealizationSink,DelayedArray-method coerce,TileDBRealizationSink,TileDBArray-method coerce,TileDBRealizationSink,TileDBMatrix-method TileDBRealizationSink TileDBRealizationSink-class type,TileDBRealizationSink-method writeTileDBArray write_block,TileDBRealizationSink-method