Package: TimerQuant 1.42.0
Joseph Barry
TimerQuant: Timer Quantification
Supplementary Data package for tandem timer methods paper by Barry et al. (2015) including TimerQuant shiny applications.
Authors:
TimerQuant_1.42.0.tar.gz
TimerQuant_1.42.0.tar.gz(r-4.7-any)TimerQuant_1.42.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
TimerQuant/json (API)
| # Install 'TimerQuant' in R: |
| install.packages('TimerQuant', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
- FRETdata - FRET Data
- maturationData - Maturation Data
- profileGradients - Profile Gradients
On BioConductor:TimerQuant-1.43.0(data/experiment 3.24)TimerQuant-1.42.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatadanio_rerio_datahighthroughputimagingdatatissuedatapkg
Last updated from:93de4fb0c4 (on RELEASE_3_23). Checks:2 ERROR, 2 WARNING. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 142 | ||
| linux-devel | WARNING | 228 | ||
| source / vignettes | ERROR | 226 | ||
| linux-release | WARNING | 187 |
Exports:fitCVgenRatioHeatmapgenTimeSteadyStateHeatmapgetBreaks10getSpacedSeqplotPrimordiumProfileratioSteadyStateratioTimeDependentrunChooseFP2ApprunTimerModellingAppsignalsimulatedRatiosimulatedSignalsimulatedSignalNtssx0ssx1x1fretFP1x1fretFP1ssx1ss
Dependencies:base64encbslibcachemclicommonmarkcpp11deSolvedigestdplyrfarverfastmapfontawesomefsgenericsggplot2gluegridExtragtablehtmltoolshttpuvisobandjquerylibjsonlitelabelinglaterlatticelifecyclelocfitmagrittrmemoisemimeotelpillarpkgconfigpromisesR6rappdirsRColorBrewerRcpprlangS7sassscalesshinysourcetoolstibbletidyselectutf8vctrsviridisLitewithrxtable
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Analytic model solutions for fluorescence intensity | tss x0ss x1 x1fretFP1 x1fretFP1ss x1ss |
| fitCV | fitCV |
| FRET Data | FRETdata |
| generate ratio heatmap | genRatioHeatmap |
| Time to reach steady-state | genTimeSteadyStateHeatmap |
| Get log10 breaks | getBreaks10 |
| Get Spaced Sequence | getSpacedSeq |
| Maturation Data | maturationData |
| Plot Primordium Profile | plotPrimordiumProfile |
| Profile Gradients | profileGradients |
| analytic function ratioSteadyState | ratioSteadyState |
| analytic function ratioTimeDependent | ratioTimeDependent |
| Run R-shiny applications | runChooseFP2App runShinyApps runTimerModellingApp |
| Signal | signal |
| Simulated Timer Signal | simulatedRatio simulatedSignal simulatedSignalN |