Package: Ularcirc 1.30.0

David Humphreys

Ularcirc: Shiny app for canonical and back splicing analysis (i.e. circular and mRNA analysis)

Ularcirc reads in STAR aligned splice junction files and provides visualisation and analysis tools for splicing analysis. Users can assess backsplice junctions and forward canonical junctions.

Authors:David Humphreys [aut, cre]

Ularcirc_1.30.0.tar.gz
Ularcirc_1.30.0.zip(r-4.7)Ularcirc_1.30.0.zip(r-4.6)Ularcirc_1.30.0.zip(r-4.5)
Ularcirc_1.30.0.tgz(r-4.6-any)Ularcirc_1.30.0.tgz(r-4.5-any)
Ularcirc_1.30.0.tar.gz(r-4.7-any)Ularcirc_1.30.0.tar.gz(r-4.6-any)
Ularcirc_1.30.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
Ularcirc/json (API)
NEWS

# Install 'Ularcirc' in R:
install.packages('Ularcirc', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:Ularcirc-1.31.0(bioc 3.24)Ularcirc-1.30.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

datarepresentationvisualizationgeneticssequencingannotationcoveragealternativesplicingdifferentialsplicing

4.60 score 4 scripts 358 downloads 2 mentions 13 exports 150 dependencies

Last updated from:632b8f304c (on RELEASE_3_23). Checks:1 ERROR, 7 WARNING, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR289
linux-devel-x86_64WARNING414
source / vignettesOK385
linux-release-x86_64WARNING378
macos-release-arm64WARNING178
macos-oldrel-arm64WARNING189
windows-develWARNING254
windows-releaseWARNING271
windows-oldrelWARNING221
wasm-releaseOK272

Exports:BSJ_detailsbsj_fastq_generatebsj_to_circRNA_sequencechimericStatscircSequenceCompatible_Annotation_DBsFilterChimericJuncsloadSTAR_chimericmiR_binding_site_Analysisplot_AllJunctionsRAD_scoreSelectUniqueJunctionsUlarcirc

Dependencies:abindAnnotationDbiAnnotationFilterAnnotationHubaskpassbase64encBHBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIObiocmakeBiocManagerBiocParallelBiocVersionBiostringsbitbit64bitopsblobBSgenomebslibcachemcigarilloclicodetoolscommonmarkcpp11crayoncrosstalkcurldata.tableDBIdbplyrDelayedArraydigestdir.expirydplyrDTevaluatefarverfastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicFeaturesGenomicRangesggplot2ggplotifyggrepelgluegridGraphicsgsubfngtablehighrhtmltoolshtmlwidgetshttpuvhttrhttr2IRangesisobandjquerylibjsonliteKEGGRESTknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimemomentsopensslOrganism.dplyrotelpillarpkgconfigplotgardenerplyrangespngpromisesprotopurrrR.methodsS3R.ooR.utilsR6rappdirsRColorBrewerRcppRCurlrestfulrrhdf5rhdf5filtersRhdf5libRhtslibrjsonrlangrmarkdownRsamtoolsRSQLitertracklayerS4ArraysS4VectorsS7sassscalesSeqinfoshinyshinydashboardshinyFilesshinyjssnowsourcetoolsSparseArraystrawrstringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunXMLxtableXVectoryamlyulab.utils

Ularcirc: A shiny application for canonical and back splicing analysis

David Humphreys, Nicolas Fossat, Patrick Tam, Joshua Ho

Rendered fromUlarcirc.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2019-10-24
Started: 2019-08-23