Package: VariantToolsData 1.36.0

Michael Lawrence

VariantToolsData: Data for the VariantTools tutorial

Data from the sequencing of a 50/50 mixture of HapMap trio samples NA12878 (CEU) and NA19240 (YRI), subset to the TP53 region.

Authors:Michael Lawrence

VariantToolsData_1.36.0.tar.gz
VariantToolsData_1.36.0.tar.gz(r-4.7-any)VariantToolsData_1.36.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
VariantToolsData/json (API)

# Install 'VariantToolsData' in R:
install.packages('VariantToolsData', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:VariantToolsData-1.37.0(data/experiment 3.24)VariantToolsData-1.36.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdatasequencingdatahapmapsnpdatadatapkg

2.60 score 1 scripts 2 exports 68 dependencies

Last updated from:34285312dc (on RELEASE_3_23). Checks:2 ERROR, 2 WARNING. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR230
linux-develWARNING352
source / vignettesERROR3771
linux-releaseWARNING411

Exports:sumDepthsTP53Region

Dependencies:abindAnnotationDbiaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsblobBSgenomecachemcigarilloclicodetoolscpp11crayoncurlDBIDelayedArrayfastmapformatRfutile.loggerfutile.optionsgenericsGenomicAlignmentsGenomicFeaturesGenomicRangesgluehttrIRangesjsonliteKEGGRESTlambda.rlatticelifecycleMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpkgconfigpngR6RCurlrestfulrRhtslibrjsonrlangRsamtoolsRSQLitertracklayerS4ArraysS4VectorsSeqinfosnowSparseArraySummarizedExperimentsysVariantAnnotationvctrsXMLXVectoryaml