Package: VplotR
Type: Package
Title: Set of tools to make V-plots and compute footprint profiles
Version: 1.22.0
Date: 2025-07-31
Encoding: UTF-8
Authors@R: 
    c(person(given = "Jacques",
           family = "Serizay",
           role = c("aut", "cre"),
           email = "jacquesserizay@gmail.com",
           comment = c(ORCID = "0000-0002-4295-0624")))
Description: The pattern of digestion and protection from DNA nucleases
        such as DNAse I, micrococcal nuclease, and Tn5 transposase can
        be used to infer the location of associated proteins. This
        package contains useful functions to analyze patterns of
        paired-end sequencing fragment density. VplotR facilitates the
        generation of V-plots and footprint profiles over single or
        aggregated genomic loci of interest.
URL: https://github.com/js2264/VplotR
BugReports: https://github.com/js2264/VplotR/issues
Depends: R (>= 4.0), GenomicRanges, IRanges, ggplot2
Imports: cowplot, magrittr, Seqinfo, GenomeInfoDb, GenomicAlignments,
        RColorBrewer, zoo, Rsamtools, S4Vectors, parallel, reshape2,
        methods, graphics, stats
Suggests: GenomicFeatures, TxDb.Scerevisiae.UCSC.sacCer3.sgdGene,
        testthat, covr, knitr, rmarkdown, pkgdown
VignetteBuilder: knitr
biocViews: NucleosomePositioning, Coverage, Sequencing,
        BiologicalQuestion, ATACSeq, Alignment
License: GPL (>= 3)
RoxygenNote: 7.2.3
Config/pak/sysreqs: libbz2-dev libicu-dev liblzma-dev libssl-dev
        xz-utils zlib1g-dev
Repository: Bioconductor 3.23
Date/Publication: 2026-04-28 12:53:27 UTC
RemoteUrl: https://github.com/bioc/VplotR
RemoteRef: RELEASE_3_23
RemoteSha: e74f35f929ea4b8aa901d74d5393b33f70bcb55e
NeedsCompilation: no
Packaged: 2026-10-31 11:42:36 UTC; root
Author: Jacques Serizay [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-4295-0624>)
Maintainer: Jacques Serizay <jacquesserizay@gmail.com>