Package: WGSmapp 1.24.0
Rujin Wang
WGSmapp: Mappability tracks of Whole-genome Sequencing from the ENCODE Project
This package provides whole-genome mappability tracks on human hg19/hg38 assembly. We employed the 100-mers mappability track from the ENCODE Project and computed weighted average of the mappability scores if multiple ENCODE regions overlap with the same bin. “Blacklist” bins, including segmental duplication regions and gaps in reference assembly from telomere, centromere, and/or heterochromatin regions are included. The dataset consists of three assembled .bam files of single-cell whole genome sequencing from 10X for illustration purposes.
Authors:
WGSmapp_1.24.0.tar.gz
WGSmapp_1.24.0.tar.gz(r-4.7-any)WGSmapp_1.24.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
WGSmapp/json (API)
| # Install 'WGSmapp' in R: |
| install.packages('WGSmapp', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:WGSmapp-1.25.0(data/experiment 3.24)WGSmapp-1.24.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatasequencingdatadnaseqdatasinglecelldatahomo_sapiens_datagenomeencodedatapkg
Last updated from:cfa0b3ad30 (on RELEASE_3_23). Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: no.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 128 | ||
| linux-devel | WARNING | 282 | ||
| source / vignettes | OK | 565 | ||
| linux-release | WARNING | 243 |
Exports:
Dependencies:BiocGenericsgenericsGenomicRangesIRangesS4VectorsSeqinfo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| GRanges with mappability scores for hg19 | mapp_hg19 |
| GRanges with mappability scores for hg38 | mapp_hg38 |