Package: WeberDivechaLCdata 1.14.1

Lukas M. Weber

WeberDivechaLCdata: Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples

Spatially-resolved transcriptomics (SRT) and single-nucleus RNA-sequencing (snRNA-seq) data from the locus coeruleus (LC) in postmortem human brain samples. Data were generated with the 10x Genomics Visium SRT and 10x Genomics Chromium snRNA-seq platforms. Datasets are stored in SpatialExperiment and SingleCellExperiment formats.

Authors:Lukas M. Weber [aut, cre], Heena R. Divecha [aut]

WeberDivechaLCdata_1.14.1.tar.gz
WeberDivechaLCdata_1.14.1.tar.gz(r-4.7-any)WeberDivechaLCdata_1.14.1.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
WeberDivechaLCdata/json (API)

# Install 'WeberDivechaLCdata' in R:

install.packages('WeberDivechaLCdata', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/lmweber/weberdivechalcdata/issues

On BioConductor:WeberDivechaLCdata-1.15.1(data/experiment 3.24)WeberDivechaLCdata-1.14.1(data/experiment 3.23)

experimentdata experimenthub reproducibleresearch expressiondata sequencingdata rnaseqdata singlecelldata spatialdata homo_sapiens_data datapkg

4.91 score 1 stars 27 scripts 2 exports 72 dependencies

Last updated from:95b17eb7d0 (on RELEASE_3_23). Checks:1 WARNING, 2 NOTE, 1 OK. Indexed: no.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	WARNING	178
linux-devel	NOTE	385
source / vignettes	OK	377
linux-release	NOTE	341

Exports:WeberDivechaLCdata_singleNucleus WeberDivechaLCdata_Visium

Dependencies:abind AnnotationDbi AnnotationHub askpass Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocVersion Biostrings bit bit64 blob cachem cli cpp11 crayon curl DBI dbplyr DelayedArray dplyr ExperimentHub fastmap filelock generics GenomicRanges glue httr httr2 IRanges jsonlite KEGGREST lattice lifecycle magick magrittr Matrix MatrixGenerics matrixStats memoise mime openssl pillar pkgconfig png purrr R6 rappdirs Rcpp rjson rlang RSQLite S4Arrays S4Vectors Seqinfo SingleCellExperiment SparseArray SpatialExperiment stringi stringr SummarizedExperiment sys tibble tidyr tidyselect utf8 vctrs withr XVector yaml

WeberDivechaLCdata package

Rendered fromWeberDivechaLCdata.Rmdusingknitr::rmarkdown

Last update: 2022-12-22
Started: 2022-10-06

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Readme and manuals

Help Manual

Help page	Topics
Spatially-resolved transcriptomics and single-nucleus RNA-sequencing data from the locus coeruleus (LC) in postmortem human brain samples	WeberDivechaLCdata-package WeberDivechaLCdata WeberDivechaLCdata_singleNucleus WeberDivechaLCdata_Visium