Package: XeniumIO 1.4.0

Marcel Ramos

XeniumIO: Import and represent Xenium data from the 10X Xenium Analyzer

The package allows users to readily import spatial data obtained from the 10X Xenium Analyzer pipeline. Supported formats include 'parquet', 'h5', and 'mtx' files. The package mainly represents data as SpatialExperiment objects.

Authors:Marcel Ramos [aut, cre], Dario Righelli [ctb], Estella Dong [ctb], NCI [fnd]

XeniumIO_1.4.0.tar.gz
XeniumIO_1.4.0.zip(r-4.7)XeniumIO_1.4.0.zip(r-4.6)XeniumIO_1.4.0.zip(r-4.5)
XeniumIO_1.4.0.tgz(r-4.6-any)XeniumIO_1.4.0.tgz(r-4.5-any)
XeniumIO_1.4.0.tar.gz(r-4.7-any)XeniumIO_1.4.0.tar.gz(r-4.6-any)
XeniumIO_1.4.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
XeniumIO/json (API)
NEWS

# Install 'XeniumIO' in R:
install.packages('XeniumIO', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/waldronlab/xeniumio/issues

On BioConductor:XeniumIO-1.5.0(bioc 3.24)XeniumIO-1.4.0(bioc 3.23)

softwareinfrastructuredataimportsinglecellspatialu24ca289073

4.70 score 3 scripts 228 downloads 3 exports 91 dependencies

Last updated from:0b577151de (on RELEASE_3_23). Checks:8 NOTE, 2 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksNOTE186
linux-devel-x86_64NOTE316
source / vignettesOK266
linux-release-x86_64NOTE336
macos-release-arm64NOTE149
macos-oldrel-arm64NOTE181
windows-develNOTE216
windows-releaseNOTE225
windows-oldrelNOTE228
wasm-releaseOK162

Exports:importTENxXeniumXeniumFile

Dependencies:abindaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsBiocIObiocmakebitbit64blobcachemclassclassIntclicliprcpp11crayoncurlDBIdbplyrDelayedArraydir.expirydplyre1071fastmapfilelockgenericsGenomicRangesglueh5mreadHDF5Arrayhmshttr2IRangesjsonliteKernSmoothlatticelifecyclemagickmagrittrMASSMatrixMatrixGenericsmatrixStatsmemoiseopensslpillarpkgconfigprettyunitsprogressproxypurrrR.methodsS3R.ooR.utilsR6rappdirsRcppreadrrhdf5rhdf5filtersRhdf5librjsonrlangRSQLites2S4ArraysS4VectorsSeqinfosfSingleCellExperimentSparseArraySpatialExperimentstringistringrSummarizedExperimentsysTENxIOtibbletidyrtidyselecttzdbunitsutf8vctrsVisiumIOvroomwithrwkXVector

XeniumIO: Import 10X Genomics Xenium Analyzer Data

Marcel Ramos

Rendered fromXeniumIO.Rmdusingknitr::rmarkdownon May 26 2026.

Last update: 2025-12-11
Started: 2024-10-01

Readme and manuals

Help Manual

Help pageTopics
XeniumIO: Import and represent Xenium data from the 10X Xenium AnalyzerXeniumIO-package XeniumIO
A class to represent Xenium output data.TENxXenium import,TENxXenium,ANY,ANY-method TENxXenium TENxXenium-class
A minimal class to represent Xenium metadata.XeniumFile import,XeniumFile,ANY,ANY-method XeniumFile XeniumFile-class