| Title: | affycomp data |
|---|---|
| Description: | Data needed by the affycomp package. |
| Authors: | Rafael A. Irizarry <[email protected]> and Zhijin Wu <[email protected]> with contributions from Simon Cawley <[email protected]> |
| Maintainer: | Robert D Shear <[email protected]> |
| License: | GPL (>= 2) |
| Version: | 1.50.0 |
| Built: | 2026-10-10 11:02:19 UTC |
| Source: | https://github.com/bioc/affycompData |
The Dilution files were processed with the
dChip package (using PM-only), and then the
function assessSD
from the affycomp package was applied.
data(lw.sd.assessment)data(lw.sd.assessment)
A list.
The Dilution and both (HGU95 and HGU133) types of Spike-in
data were processed with Affymetrix MAS 5.0 software,
yielding three "MAS 5.0" ExpressionSet's.
(These are available, in csv-format, at
http://affycomp.jhsph.edu/AFFY2/[email protected]/030424.1033/.)
Then various assessment functions from the affycomp package
(most recently, version 1.28.0) were applied.
mas5.assessment resulted from
assessAll on Dilution and
HGU95;
mas5.assessment.133 from
assessSpikeIn on HGU133;
mas5.assessment2 from
assessSpikeIn2 on HGU95;
and mas5.assessment2.133 from
assessSpikeIn2 on HGU133.
data(mas5.assessment) data(mas5.assessment.133) data(mas5.assessment2) data(mas5.assessment2.133)data(mas5.assessment) data(mas5.assessment.133) data(mas5.assessment2) data(mas5.assessment2.133)
A list of list.
The Dilution and both (HGU95 and HGU133) types of Spike-in
data were processed with the (version 1.0) function
rma, yielding three "RMA"
ExpressionSet's.
(These are available, in csv-format, at
http://affycomp.jhsph.edu/AFFY2/[email protected]/030429.1332/.)
Then various assessment functions from the affycomp package
(most recently, version 1.28.0) were applied.
rma.assessment resulted from
assessAll on Dilution and HGU95;
rma.assessment.133 from
assessSpikeIn on HGU133;
rma.assessment2 from
assessSpikeIn2 on HGU95;
and rma.assessment2.133 from
assessSpikeIn2 on HGU133.
data(rma.assessment) data(rma.assessment.133) data(rma.assessment2) data(rma.assessment2.133)data(rma.assessment) data(rma.assessment.133) data(rma.assessment2) data(rma.assessment2.133)
A list of list.
The Dilution files were processed with the
affy version 1.0 package rma add-on function,
and then the function assessSD
from the affycomp package was applied.
data(rma.sd.assessment)data(rma.sd.assessment)
A list.