Package: aggregateBioVar 1.22.0

aggregateBioVar: Differential Gene Expression Analysis for Multi-subject scRNA-seq

For single cell RNA-seq data collected from more than one subject (e.g. biological sample or technical replicates), this package contains tools to summarize single cell gene expression profiles at the level of subject. A SingleCellExperiment object is taken as input and converted to a list of SummarizedExperiment objects, where each list element corresponds to an assigned cell type. The SummarizedExperiment objects contain aggregate gene-by-subject count matrices and inter-subject column metadata for individual subjects that can be processed using downstream bulk RNA-seq tools.

Authors:Jason Ratcliff [aut, cre], Andrew Thurman [aut], Michael Chimenti [ctb], Alejandro Pezzulo [ctb]