Package: anota 1.60.0

Ola Larsson

anota: ANalysis Of Translational Activity (ANOTA).

Genome wide studies of translational control is emerging as a tool to study verious biological conditions. The output from such analysis is both the mRNA level (e.g. cytosolic mRNA level) and the levl of mRNA actively involved in translation (the actively translating mRNA level) for each mRNA. The standard analysis of such data strives towards identifying differential translational between two or more sample classes - i.e. differences in actively translated mRNA levels that are independent of underlying differences in cytosolic mRNA levels. This package allows for such analysis using partial variances and the random variance model. As 10s of thousands of mRNAs are analyzed in parallell the library performs a number of tests to assure that the data set is suitable for such analysis.

Authors:Ola Larsson <[email protected]>, Nahum Sonenberg <[email protected]>, Robert Nadon <[email protected]>

anota_1.60.0.tar.gz
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anota_1.60.0.tgz(r-4.6-any)anota_1.60.0.tgz(r-4.5-any)
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anota_1.60.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
anota/json (API)
NEWS

# Install 'anota' in R:
install.packages('anota', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Datasets:

On BioConductor:anota-1.61.0(bioc 3.24)anota-1.60.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

geneexpressiondifferentialexpressionmicroarraysequencing

4.38 score 1 packages 2 scripts 473 downloads 4 mentions 4 exports 32 dependencies

Last updated from:dd09d4de14 (on RELEASE_3_23). Checks:1 ERROR, 7 NOTE, 1 OK, 1 FAIL. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR144
linux-devel-x86_64NOTE260
source / vignettesOK206
linux-release-x86_64NOTE165
macos-release-arm64NOTE110
macos-oldrel-arm64NOTE127
windows-develNOTE139
windows-releaseNOTE98
windows-oldrelNOTE97
wasm-releaseFAIL1506

Exports:anotaGetSigGenesanotaPerformQcanotaPlotSigGenesanotaResidOutlierTest

Dependencies:BiobaseBiocGenericsclicpp11farvergenericsggplot2gluegtableisobandlabelinglatticelifecyclemagrittrMASSMatrixmulttestplyrqvalueR6RColorBrewerRcppreshape2rlangS7scalesstringistringrsurvivalvctrsviridisLitewithr

ANalysis Of Translational Activity (anota)

Rendered fromanota.Rnwusingutils::Sweaveon Jun 09 2026.

Last update: 2013-11-01
Started: 2013-11-01