Package: apeglm 1.34.0

Anqi Zhu

apeglm: Approximate posterior estimation for GLM coefficients

apeglm provides Bayesian shrinkage estimators for effect sizes for a variety of GLM models, using approximation of the posterior for individual coefficients.

Authors:Anqi Zhu [aut, cre], Joshua Zitovsky [ctb], Joseph Ibrahim [aut], Michael Love [aut]

apeglm_1.34.0.tar.gz
apeglm_1.34.0.zip(r-4.7)apeglm_1.34.0.zip(r-4.6)apeglm_1.34.0.zip(r-4.5)
apeglm_1.34.0.tgz(r-4.6-x86_64)apeglm_1.34.0.tgz(r-4.6-arm64)apeglm_1.34.0.tgz(r-4.5-x86_64)apeglm_1.34.0.tgz(r-4.5-arm64)
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manual.pdf |manual.html✨
card.svg |card.png
apeglm/json (API)
NEWS

# Install 'apeglm' in R:
install.packages('apeglm', repos = c('https://bioc-release.r-universe.dev', 'https://cloud.r-project.org'))
Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:apeglm-1.35.0(bioc 3.24)apeglm-1.34.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

immunooncologysequencingrnaseqdifferentialexpressiongeneexpressionbayesiancpp

8.70 score 9 packages 1.3k scripts 7.1k downloads 41 mentions 4 exports 28 dependencies

Last updated from:685e82d2c5 (on RELEASE_3_23). Checks:1 ERROR, 13 OK. Indexed: no.

TargetResultTimeFilesSyslog
bioc-checksERROR210
linux-devel-arm64OK299
linux-devel-x86_64OK371
source / vignettesOK382
linux-release-arm64OK353
linux-release-x86_64OK365
macos-release-arm64OK241
macos-release-x86_64OK707
macos-oldrel-arm64OK232
macos-oldrel-x86_64OK381
windows-develOK320
windows-releaseOK308
windows-oldrelOK284
wasm-releaseOK179

Exports:apeglmbbEstDisplogLikNBsvalue

Dependencies:abindbbmlebdsmatrixBiobaseBiocGenericscodaDelayedArrayemdbookgenericsGenomicRangesIRangeslatticeMASSMatrixMatrixGenericsmatrixStatsmvtnormnumDerivplyrRcppRcppEigenRcppNumericalS4ArraysS4VectorsSeqinfoSparseArraySummarizedExperimentXVector

Effect size estimation with apeglm

Anqi Zhu, Joseph G. Ibrahim, and Michael I. Love

Rendered fromapeglm.Rmdusingknitr::rmarkdownon Jun 02 2026.

Last update: 2021-05-11
Started: 2017-08-07