{ "_id": "6a129e4cacfb0bcc41d0fb1e", "Package": "AIMS", "Type": "Package", "Title": "AIMS : Absolute Assignment of Breast Cancer Intrinsic Molecular\nSubtype", "Version": "1.44.0", "Date": "2014-06-25", "Description": "This package contains the AIMS implementation. It contains\nnecessary functions to assign the five intrinsic molecular\nsubtypes (Luminal A, Luminal B, Her2-enriched, Basal-like,\nNormal-like). Assignments could be done on individual samples\nas well as on dataset of gene expression data.", "Author": "Eric R. Paquet, Michael T. Hallett", "Maintainer": "Eric R Paquet ", "biocViews": "ImmunoOncology, Classification, RNASeq, Microarray,\nSoftware, GeneExpression", "License": "Artistic-2.0", "URL": "http://www.bci.mcgill.ca/AIMS", "LazyData": "yes", "InstallableEverywhere": "yes", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:40:15 UTC", "RemoteUrl": "https://github.com/bioc/AIMS", "RemoteRef": "RELEASE_3_23", "RemoteSha": "719e24b5854b16bfa071ba7b544e26476c5acfdb", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-24 06:35:43 UTC", "User": "root" }, "MD5sum": "80d2ad752d5fc87adb85f4e45e9d8b0e", "_user": "bioc-release", "_type": "src", "_file": "AIMS_1.44.0.tar.gz", "_fileid": "6aa413bed9ddef2d63badcda253ebb46ce5a90b989a5b32c5da9dd094ca55320", "_filesize": 595000, "_sha256": "6aa413bed9ddef2d63badcda253ebb46ce5a90b989a5b32c5da9dd094ca55320", "_created": "2026-05-24T06:35:43.000Z", "_published": "2026-05-24T06:44:28.259Z", "_jobs": [ { "job": 77577700578, "time": 158, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7182936404" }, { "job": 77577700581, "time": 217, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7182942185" }, { "job": 77577700587, "time": 167, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7182937293" }, { "job": 77577700580, "time": 103, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7182931228" }, { "job": 77577700582, "time": 105, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7182931351" }, { "job": 77577531506, "time": 210, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7182921493" }, { "job": 77577700576, "time": 128, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7182933423" }, { "job": 77577700595, "time": 483, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7182969065" }, { "job": 77577700596, "time": 452, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7182965637" }, { "job": 77577700594, "time": 495, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7182970158" } ], "_bioccheck": { "error": 1, "warning": 1, "note": 10 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354087663", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/AIMS", "_commit": { "id": "719e24b5854b16bfa071ba7b544e26476c5acfdb", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777380015 }, "_maintainer": { "name": "Eric R Paquet", "email": "eric.r.paquet@gmail.com", "login": "meoyo", "description": "", "uuid": 832788 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10", "role": "Depends" }, { "package": "e1071", "role": "Depends" }, { "package": "Biobase", "role": "Depends" }, { "package": "breastCancerVDX", "role": "Suggests" }, { "package": "hgu133a.db", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" }, { "package": "BiocGenerics", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 4, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.45.0", "bioc": "3.24" }, { "branch": "release", "version": "1.44.0", "bioc": "3.23" } ], "_topics": [ "immunooncology", "classification", "rnaseq", "microarray", "software", "geneexpression" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 800, "source": "https://www.bioconductor.org/packages/stats/bioc/AIMS" }, "_mentions": 77, "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/AIMS.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "applyAIMS" ], "_datasets": [ { "name": "AIMSmodel", "title": "The AIMS model", "object": "AIMSmodel", "class": [ "list" ], "fields": [], "table": false, "tojson": false }, { "name": "mcgillExample", "title": "Sample of a breast cancer gene expression dataset generated at McGill University", "object": "mcgillExample", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "AIMSmodel", "title": "The AIMS model", "topics": [ "AIMSmodel" ] }, { "page": "applyAIMS", "title": "Function that will assign the AIMS subtype to a gene expression matrix", "topics": [ "applyAIMS" ] }, { "page": "mcgillExample", "title": "Sample of a breast cancer gene expression dataset generated at McGill University", "topics": [ "mcgillExample" ] } ], "_rundeps": [ "Biobase", "BiocGenerics", "class", "e1071", "generics", "MASS", "proxy" ], "_vignettes": [ { "source": "AIMS.Rnw", "filename": "AIMS.pdf", "title": "AIMS An Introduction (HowTo)", "engine": "utils::Sweave", "headings": [], "created": "2014-08-14 23:28:35", "modified": "2014-08-14 23:28:35", "commits": 1 } ], "_score": 5.380211241711606, "_indexed": false, "_nocasepkg": "aims", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/AIMS", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.44.0", "date": "2026-05-24T06:39:16.000Z", "distro": "noble", "commit": "719e24b5854b16bfa071ba7b544e26476c5acfdb", "fileid": "0012b10e68523790ac4b2bc2b40ef9dd07db741a4e493d04bee4a53e0b2a9fd5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354087663" }, { "r": "4.6.0", "os": "linux", "version": "1.44.0", "date": "2026-05-24T06:38:28.000Z", "distro": "noble", "commit": "719e24b5854b16bfa071ba7b544e26476c5acfdb", "fileid": "16dbe883dca80587ec184986baf50e6b8690bfe1aac5674139b50ead8843a816", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354087663" }, { "r": "4.5.3", "os": "mac", "version": "1.44.0", "date": "2026-05-24T06:37:29.000Z", "commit": "719e24b5854b16bfa071ba7b544e26476c5acfdb", "fileid": "48182099699112a5a3786c8895c167d1621aef8d89f4e1965e27745206d8e266", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354087663" }, { "r": "4.6.0", "os": "mac", "version": "1.44.0", "date": "2026-05-24T06:37:28.000Z", "commit": "719e24b5854b16bfa071ba7b544e26476c5acfdb", "fileid": "6b6d4d61ac22afc75a169745e90b0f489d12b7dcea16d15cdbbcaade3cf43852", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354087663" }, { "r": "4.6.0", "os": "wasm", "version": "1.44.0", "date": "2026-05-24T06:38:05.000Z", "commit": "719e24b5854b16bfa071ba7b544e26476c5acfdb", "fileid": "d2ee7020f8ee33090912e2e6ae508d40e3dc0c0b91ff0fd88cfc71261009bbbd", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354087663" }, { "r": "4.7.0", "os": "win", "version": "1.44.0", "date": "2026-05-24T06:43:39.000Z", "commit": "719e24b5854b16bfa071ba7b544e26476c5acfdb", "fileid": "f7bb2498b8dc28ae13e4dc4c0ccb5852fdd57b0e312d257f1fb0a39a23dcbe04", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354087663" }, { "r": "4.5.3", "os": "win", "version": "1.44.0", "date": "2026-05-24T06:43:08.000Z", "commit": "719e24b5854b16bfa071ba7b544e26476c5acfdb", "fileid": "ee3ed74dbae7349c8a093acc8bcce8d77e904840f3cfd203c9676f668001caa8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354087663" }, { "r": "4.6.0", "os": "win", "version": "1.44.0", "date": "2026-05-24T06:43:53.000Z", "commit": "719e24b5854b16bfa071ba7b544e26476c5acfdb", "fileid": "39844b7b31fd7332e7ac5faaca333c9c457385b52bd6a04cac28274ee9c84832", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26354087663" } ] }