{
  "_id": "6a37aca13efcd9bda4424ae2",
  "Package": "AMOUNTAIN",
  "Type": "Package",
  "Title": "Active modules for multilayer weighted gene co-expression\nnetworks: a continuous optimization approach",
  "Version": "1.38.0",
  "Date": "2016-11-12",
  "Author": "Dong Li, Shan He, Zhisong Pan and Guyu Hu",
  "Maintainer": "Dong Li <dxl466@cs.bham.ac.uk>",
  "Description": "A pure data-driven gene network, weighted gene\nco-expression network (WGCN) could be constructed only from\nexpression profile. Different layers in such networks may\nrepresent different time points, multiple conditions or various\nspecies. AMOUNTAIN aims to search active modules in multi-layer\nWGCN using a continuous optimization approach.",
  "License": "GPL (>= 2)",
  "RoxygenNote": "5.0.1",
  "SystemRequirements": "gsl",
  "biocViews": "GeneExpression, Microarray, DifferentialExpression, Network",
  "VignetteBuilder": "knitr",
  "Config/pak/sysreqs": "libgsl0-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:43:49 UTC",
  "RemoteUrl": "https://github.com/bioc/AMOUNTAIN",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-21 09:15:15 UTC",
    "User": "root"
  },
  "MD5sum": "2270537d80ab1a3794e0ef9d09049d11",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "AMOUNTAIN_1.38.0.tar.gz",
  "_fileid": "e88c92d047d10e69d754913956c71590b2f8652cb8b9958803fa43c18ac96549",
  "_filesize": 1513565,
  "_sha256": "e88c92d047d10e69d754913956c71590b2f8652cb8b9958803fa43c18ac96549",
  "_created": "2026-06-21T09:15:15.000Z",
  "_published": "2026-06-21T09:19:29.962Z",
  "_jobs": [
    {
      "job": 82557870620,
      "time": 151,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7773856082"
    },
    {
      "job": 82557870626,
      "time": 137,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7773854596"
    },
    {
      "job": 82557870629,
      "time": 224,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7773865917"
    },
    {
      "job": 82557870621,
      "time": 155,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7773856854"
    },
    {
      "job": 82557870638,
      "time": 183,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7773860488"
    },
    {
      "job": 82557870625,
      "time": 112,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7773850765"
    },
    {
      "job": 82557870627,
      "time": 202,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7773863112"
    },
    {
      "job": 82557870637,
      "time": 107,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7773850166"
    },
    {
      "job": 82557870639,
      "time": 218,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7773865075"
    },
    {
      "job": 82557657160,
      "time": 198,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7773835935"
    },
    {
      "job": 82557870635,
      "time": 129,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7773853077"
    },
    {
      "job": 82557870618,
      "time": 104,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7773849910"
    },
    {
      "job": 82557870615,
      "time": 73,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7773845686"
    },
    {
      "job": 82557870623,
      "time": 111,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7773851736"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 2,
    "note": 11
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/AMOUNTAIN",
  "_commit": {
    "id": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380229
  },
  "_maintainer": {
    "name": "Dong Li",
    "email": "dxl466@cs.bham.ac.uk"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3.0",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "qgraph",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.39.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.38.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "geneexpression",
    "microarray",
    "differentialexpression",
    "network",
    "gsl"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 440,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_searchresults": 2,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/AMOUNTAIN.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "CGPFixSS",
    "CGPFixSSMultiLayer",
    "CGPFixSSTwolayer",
    "EuclideanProjectionENNORM",
    "moduleIdentificationGPFixSS",
    "moduleIdentificationGPFixSSMultilayer",
    "moduleIdentificationGPFixSSTwolayer",
    "multilayernetworkSimulation",
    "networkSimulation",
    "twolayernetworkSimulation"
  ],
  "_help": [
    {
      "page": "CGPFixSS",
      "title": "Module Identification",
      "topics": [
        "CGPFixSS"
      ]
    },
    {
      "page": "CGPFixSSMultiLayer",
      "title": "Module Identification for multi-layer network",
      "topics": [
        "CGPFixSSMultiLayer"
      ]
    },
    {
      "page": "CGPFixSSTwolayer",
      "title": "Module Identification for two-layer network",
      "topics": [
        "CGPFixSSTwolayer"
      ]
    },
    {
      "page": "EuclideanProjectionENNORM",
      "title": "Euclidean projection on elastic net",
      "topics": [
        "EuclideanProjectionENNORM"
      ]
    },
    {
      "page": "moduleIdentificationGPFixSS",
      "title": "Module Identification",
      "topics": [
        "moduleIdentificationGPFixSS"
      ]
    },
    {
      "page": "moduleIdentificationGPFixSSMultilayer",
      "title": "Module Identification for multi-layer network",
      "topics": [
        "moduleIdentificationGPFixSSMultilayer"
      ]
    },
    {
      "page": "moduleIdentificationGPFixSSTwolayer",
      "title": "Module Identification for two-layer network",
      "topics": [
        "moduleIdentificationGPFixSSTwolayer"
      ]
    },
    {
      "page": "multilayernetworkSimulation",
      "title": "Illustration of multi-layer weighted network simulation",
      "topics": [
        "multilayernetworkSimulation"
      ]
    },
    {
      "page": "networkSimulation",
      "title": "Illustration of weighted network simulation",
      "topics": [
        "networkSimulation"
      ]
    },
    {
      "page": "twolayernetworkSimulation",
      "title": "Illustration of two-layer weighted network simulation",
      "topics": [
        "twolayernetworkSimulation"
      ]
    }
  ],
  "_rundeps": [],
  "_sysdeps": [
    {
      "shlib": "libgslcblas",
      "package": "libgslcblas0",
      "headers": "libgsl-dev",
      "source": "gsl",
      "version": "2.7.1+dfsg-6ubuntu2",
      "name": "gsl",
      "homepage": "https://www.gnu.org/software/gsl",
      "description": "GNU Scientific Library (GSL) -- blas library package"
    }
  ],
  "_vignettes": [
    {
      "source": "AMOUNTAIN.Rmd",
      "filename": "AMOUNTAIN.html",
      "title": "Usage of AMOUNTAIN",
      "author": "Dong Li dxl466@cs.bham.ac.uk",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Motivation",
        "Network simulation",
        "Module identification for single layer network",
        "Module identification for two-layer network",
        "Module identification for multi-layer network",
        "Module identification for real-world data",
        "High-performance considerations",
        "Biological explanation",
        "Developer page",
        "Session Information",
        "References"
      ],
      "created": "2016-11-16 11:47:19",
      "modified": "2016-11-16 11:47:19",
      "commits": 1
    }
  ],
  "_score": 3.778151250383644,
  "_indexed": false,
  "_nocasepkg": "amountain",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/AMOUNTAIN",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-06-21T09:17:44.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "1738c2bf3ebc49ef0698fecd46e12c7f051b3a274b965b882231876bd10112ac",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-06-21T09:19:02.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "a4ac5832ad51b197453af14c437c9fc9d119a3ba77e6212ff67dfaf936b3f7b1",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-06-21T09:18:01.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "1f5d33603ed265789ec42febd4423bc749381b12d6b1601b70c15fecc003d6e9",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-06-21T09:18:25.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "ba655824e9bbe0a4bfc41f28eb9a6a9fa289483a7b972514a28506a30dc4b595",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-06-21T09:17:09.000Z",
      "arch": "aarch64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "e2fe53627457d2141b081040427852e55814851a4be386fa8bf695979a8f5e8c",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-06-21T09:18:34.000Z",
      "arch": "x86_64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "d5cfc79b961e5530548fa05150c2d68cd4bacabff12bfbdbe49661c626a3aa27",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-06-21T09:16:57.000Z",
      "arch": "aarch64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "62fc43d157ba7d68376567feaa3d432f6e748f2db5d71ff54b28f1e3f17153fa",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-06-21T09:18:42.000Z",
      "arch": "x86_64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "001cbacf12debdb0cd89a210a122abf4764f5f81c69e05024effb86faa7b706e",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.38.0",
      "date": "2026-06-21T09:17:36.000Z",
      "arch": "emscripten",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "6c1bbb43a8a898176c42b94e6cfa1bc1bc91ac24762d3b884574a7488bbff5ad",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-06-21T09:16:43.000Z",
      "arch": "x86_64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "684b2b7646ae2df04c2d2338e06f501f6ec91c5d7690156202d2bc9dd14c9c63",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-06-21T09:16:23.000Z",
      "arch": "x86_64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "d660f1152132551e8a9d166cac1814fd119c472e3cedb8fe8ae1e1b59e38b823",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-06-21T09:17:00.000Z",
      "arch": "x86_64",
      "commit": "1b53ca155b41d810903db851dc55494d3a2f1dd0",
      "fileid": "15963e683db51afa0c342cce7093b3fa0931b9d1fb44d8c1a2ecad67ac4100f8",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/27899691051"
    }
  ]
}