{ "_id": "6abba02499f7aa8c6aa4715f", "Package": "ASEB", "Title": "Predict Acetylated Lysine Sites", "Version": "1.56.0", "Author": "Likun Wang and Tingting Li\n.", "Description": "ASEB is an R package to predict lysine sites that can be\nacetylated by a specific KAT-family.", "Maintainer": "Likun Wang ", "License": "GPL (>= 3)", "biocViews": "Proteomics", "Collate": "AllClasses.R AllGenerics.R SequenceInfo.R readSequence.R\nasebSites.R asebProteins.R drawStat.R drawEScurve.R", "LazyLoad": "yes", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:36:07 UTC", "RemoteUrl": "https://github.com/bioc/ASEB", "RemoteRef": "RELEASE_3_23", "RemoteSha": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-09-29 10:07:22 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "ASEB_1.56.0.tar.gz", "_fileid": "https://r2.ropensci.org/79bd39d14f6404109e79d1f7b2048af3601828eb86b3785c6022f51ed8a9cc7c", "_filesize": 600565, "_sha256": "79bd39d14f6404109e79d1f7b2048af3601828eb86b3785c6022f51ed8a9cc7c", "_expires": "2027-01-07T11:25:21.000Z", "_created": "2026-09-29T10:07:22.000Z", "_published": "2026-09-29T11:25:23.164Z", "_bioccheck": { "error": 1, "warning": 3, "note": 12 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764", "_status": "success", "_upstream": "https://github.com/bioc/ASEB", "_commit": { "id": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379767 }, "_maintainer": { "name": "Likun Wang", "email": "wanglk@hsc.pku.edu.cn" }, "_distro": "resolute", "_jobs": [ { "job": 109357438534, "time": 145, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11025881594" }, { "job": 109357438645, "time": 111, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "11024789677" }, { "job": 109357438680, "time": 266, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11025534528" }, { "job": 109357438896, "time": 99, "config": "linux-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11025960912" }, { "job": 109357438595, "time": 213, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11026930296" }, { "job": 109357438567, "time": 82, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "11029677127" }, { "job": 109357438590, "time": 243, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "WARNING", "artifact": "11030371019" }, { "job": 109357438646, "time": 131, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "11030256247" }, { "job": 109357438668, "time": 163, "config": "macos-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "11030410980" }, { "job": 109356268750, "time": 198, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11025816087" }, { "job": 109357438555, "time": 101, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11024769628" }, { "job": 109357438613, "time": 184, "config": "windows-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "11025946424" }, { "job": 109357438651, "time": 113, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11025494592" }, { "job": 109357438742, "time": 85, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11025811903" }, { "job": 109357438630, "time": 179, "config": "windows-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11027200050" }, { "job": 109357438664, "time": 81, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11026400018" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.8.0", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "graphics", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "utils", "role": "Imports" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.57.0", "bioc": "3.24" }, { "branch": "release", "version": "1.56.0", "bioc": "3.23" } ], "_topics": [ "proteomics", "cpp" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 470, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 519, "source": "https://www.bioconductor.org/packages/stats/bioc/ASEB" }, "_mentions": 8, "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/ASEB.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "asebProteins", "asebSites", "drawEScurve", "drawStat", "readSequence", "SequenceInfo" ], "_help": [ { "page": "asebProteins", "title": "prediction of all lysine sites on a specific protein that can be acetylated", "topics": [ "asebProteins", "asebProteins,character,character,character-method", "asebProteins,SequenceInfo,SequenceInfo,SequenceInfo-method" ] }, { "page": "asebSites", "title": "prediction of lysine sites that can be acetylated", "topics": [ "asebSites", "asebSites,character,character,character-method", "asebSites,SequenceInfo,SequenceInfo,SequenceInfo-method" ] }, { "page": "drawEScurve", "title": "draw Enriment Score curves for specific sites", "topics": [ "drawEScurve", "drawEScurve,data.frame-method" ] }, { "page": "drawStat", "title": "draw P-values and enrichment scores for all lysine sites on a specific protein", "topics": [ "drawStat", "drawStat,data.frame-method" ] }, { "page": "readSequence", "title": "read sequences from file", "topics": [ "readSequence" ] }, { "page": "SequenceInfo", "title": "\"SequenceInfo\" class", "topics": [ "SequenceInfo" ] } ], "_rundeps": [], "_sysdeps": [ { "shlib": "libstdc++", "package": "libstdc++6", "source": "gcc", "version": "16-20260322-1ubuntu1", "name": "c++", "homepage": "http://gcc.gnu.org/", "description": "GNU Standard C++ Library v3" } ], "_vignettes": [ { "source": "ASEB.Rnw", "filename": "ASEB.pdf", "title": "ASEB", "engine": "utils::Sweave", "headings": [ "Introduction", "Getting started", "Methods", "Data", "Examples" ], "created": "2013-11-01 20:22:48", "modified": "2022-01-25 08:50:28", "commits": 2 } ], "_score": 4.204119982655925, "_indexed": false, "_nocasepkg": "aseb", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/ASEB", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.56.0", "date": "2026-09-29T10:09:26.000Z", "distro": "resolute", "arch": "aarch64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/4a58d51f72367ea019b45896c11288709bae2b55fd502b6d847b1c31fb19c560", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.7.0", "os": "linux", "version": "1.56.0", "date": "2026-09-29T10:11:53.000Z", "distro": "resolute", "arch": "x86_64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/dcdb04240847edd5647b5dad4b14a7f1dc524601e4fcc9dd6f62daeb3c20272a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.6.1", "os": "linux", "version": "1.56.0", "date": "2026-09-29T10:09:17.000Z", "distro": "resolute", "arch": "aarch64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/b4be12b47e53a0cfe7dc84fdda7d8a75789320e894184bd98ef41ffafefb4425", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.6.1", "os": "linux", "version": "1.56.0", "date": "2026-09-29T10:11:02.000Z", "distro": "resolute", "arch": "x86_64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/a61e841f7461e7e726eaa9e3716dcf828ce34343933f06a4fa848bc5a3bef4df", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.5.3", "os": "mac", "version": "1.56.0", "date": "2026-09-29T11:22:02.000Z", "arch": "aarch64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/18aa907cb82d6b19fd247de844bfb17232cb27fc8199e1ed1239d5931853d68b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.5.3", "os": "mac", "version": "1.56.0", "date": "2026-09-29T11:24:01.000Z", "arch": "x86_64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/467a323762d6364f880aa35f4d8e44b44bc6adfc52182d0d3b67995c0b403218", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.6.1", "os": "mac", "version": "1.56.0", "date": "2026-09-29T11:23:04.000Z", "arch": "aarch64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/24cbd46252c59c53eeb78a399aa466ca7c1fd62503f6dfb233dab2fe86b97a25", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.6.1", "os": "mac", "version": "1.56.0", "date": "2026-09-29T11:23:12.000Z", "arch": "x86_64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/902091477347b775848988387509d9fb3b645e162d3e0a8c5646a12fae7e4ce4", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.6.0", "os": "wasm", "version": "1.56.0", "date": "2026-09-29T10:09:25.000Z", "arch": "emscripten", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/bc4da1d843636efd1eb2106eee67713ca4aecc30a0389cc29541364bd62ff4f3", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.7.0", "os": "win", "version": "1.56.0", "date": "2026-09-29T10:10:26.000Z", "arch": "aarch64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/dafcccb30f0113cc8592de068a9cb2ad228baa4bde4b5318bc92df9d5e911e9b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.7.0", "os": "win", "version": "1.56.0", "date": "2026-09-29T10:08:25.000Z", "arch": "x86_64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/56444ad9576528504cb40062deaf438417e9144986509737944616fb80811c5c", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.5.3", "os": "win", "version": "1.56.0", "date": "2026-09-29T10:08:31.000Z", "arch": "x86_64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/8a232a4c2c9ac2954336bec8287ea0071e12282f762f9aa870bdec9f2ef2bc56", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.6.1", "os": "win", "version": "1.56.0", "date": "2026-09-29T10:10:23.000Z", "arch": "aarch64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/ed9d2dbb48130b8202c17d9565348680954238d01df1afb45b2f202959860f40", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" }, { "r": "4.6.1", "os": "win", "version": "1.56.0", "date": "2026-09-29T10:08:30.000Z", "arch": "x86_64", "commit": "10138ac7031ed3fb2928eac5ce855c0f47d83b0e", "fileid": "https://r2.ropensci.org/7ea4a46df7237fd8a7db54d3f7deac4a86e5c873c6de1b6b653e62347cbac992", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553162764" } ] }