{ "_id": "6abba08999f7aa8c6aa471ee", "Package": "AWFisher", "Type": "Package", "Title": "An R package for fast computing for adaptively weighted fisher's\nmethod", "Version": "1.26.0", "Date": "2020-02-08", "Author": "Zhiguang Huo", "Maintainer": "Zhiguang Huo ", "biocViews": "StatisticalMethod, Software", "VignetteBuilder": "knitr", "Description": "Implementation of the adaptively weighted fisher's method,\nincluding fast p-value computing, variability index, and\nmeta-pattern.", "License": "GPL-3", "BugReports": "https://github.com/Caleb-Huo/AWFisher/issues", "Packaged": { "Date": "2026-09-29 10:08:56 UTC", "User": "root" }, "RoxygenNote": "6.1.1", "NeedsCompilation": "yes", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:50:30 UTC", "RemoteUrl": "https://github.com/bioc/AWFisher", "RemoteRef": "RELEASE_3_23", "RemoteSha": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "_user": "bioc-release", "_type": "src", "_file": "AWFisher_1.26.0.tar.gz", "_fileid": "https://r2.ropensci.org/bac7ec60ed46f67bf5a42a6e63494df52a1be1f5902b05b0869229e0ee75ea55", "_filesize": 1692935, "_sha256": "bac7ec60ed46f67bf5a42a6e63494df52a1be1f5902b05b0869229e0ee75ea55", "_expires": "2027-01-07T11:27:03.000Z", "_created": "2026-09-29T10:08:56.000Z", "_published": "2026-09-29T11:27:05.298Z", "_bioccheck": { "error": 1, "warning": 0, "note": 8 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958", "_status": "success", "_upstream": "https://github.com/bioc/AWFisher", "_commit": { "id": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777380630 }, "_maintainer": { "name": "Zhiguang Huo", "email": "zhuo@ufl.edu", "login": "caleb-huo", "description": "Assistant Professor at Department of Biostatistics of University of Florida", "uuid": 6474826 }, "_distro": "resolute", "_jobs": [ { "job": 109357917990, "time": 144, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11026255868" }, { "job": 109357918318, "time": 128, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "11025549167" }, { "job": 109357918301, "time": 212, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11025589008" }, { "job": 109357918354, "time": 105, "config": "linux-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11026885209" }, { "job": 109357918337, "time": 207, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11026980405" }, { "job": 109357918202, "time": 108, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "11030640487" }, { "job": 109357918200, "time": 247, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11030505950" }, { "job": 109357918565, "time": 122, "config": "macos-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11029617698" }, { "job": 109357918324, "time": 267, "config": "macos-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11029827154" }, { "job": 109356878923, "time": 177, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11024629865" }, { "job": 109357918021, "time": 99, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "11025926471" }, { "job": 109357918154, "time": 212, "config": "windows-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "11027315271" }, { "job": 109357918257, "time": 134, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11026285569" }, { "job": 109357918280, "time": 84, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "11026170399" }, { "job": 109357918342, "time": 174, "config": "windows-release-arm64", "r": "4.6.1", "check": "NOTE", "artifact": "11026940373" }, { "job": 109357918329, "time": 66, "config": "windows-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11026175579" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.6", "role": "Depends" }, { "package": "edgeR", "role": "Imports" }, { "package": "limma", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "tightClust", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.27.0", "bioc": "3.24" }, { "branch": "release", "version": "1.26.0", "bioc": "3.23" } ], "_topics": [ "statisticalmethod", "software" ], "_stars": 5, "_contributors": [ { "user": "caleb-huo", "count": 118, "uuid": 6474826 }, { "user": "nturaga", "count": 2, "uuid": 2746443 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 470, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 464, "source": "https://www.bioconductor.org/packages/stats/bioc/AWFisher" }, "_devurl": "https://github.com/caleb-huo/awfisher", "_searchresults": 0, "_rbuild": "4.6.1", "_assets": [ "extra/AWFisher.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md" ], "_homeurl": "https://github.com/caleb-huo/awfisher", "_realowner": "bioc", "_cranurl": false, "_exports": [ "AWFisher_pvalue", "biomarkerCategorization", "function_edgeR", "function_limma", "variabilityIndex" ], "_datasets": [ { "name": "data_mouseMetabolism", "title": "Mouse metabolism microarray data", "object": "data_mouseMetabolism", "file": "data_mouseMetabolism.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "AWFisher_pvalue", "title": "AWFisher", "topics": [ "AWFisher_pvalue" ] }, { "page": "biomarkerCategorization", "title": "biomarker categrorization", "topics": [ "biomarkerCategorization" ] }, { "page": "data_mouseMetabolism", "title": "Mouse metabolism microarray data", "topics": [ "data_mouseMetabolism" ] }, { "page": "function_edgeR", "title": "use edgeR function to get pvalue", "topics": [ "function_edgeR" ] }, { "page": "function_limma", "title": "use limma function to get pvalue", "topics": [ "function_limma" ] }, { "page": "variabilityIndex", "title": "Variability Index", "topics": [ "variabilityIndex" ] } ], "_readme": "https://github.com/bioc/AWFisher/raw/RELEASE_3_23/README.md", "_rundeps": [ "edgeR", "lattice", "limma", "locfit", "statmod" ], "_vignettes": [ { "source": "AWFisher.Rmd", "filename": "AWFisher.html", "title": "AW Fisher tutorial", "author": "Zhiguang Huo (Department of Biostatistics, University of Florida)", "engine": "knitr::knitr", "headings": [ "Introduction", "Background", "Statistical method", "About this tutorial", "About the package", "How to install the package", "How to cite the package", "Maintainer", "Description about the example data -- multi-tissue mouse metabolism transcriptomic data", "Read in the example data", "Prepare the input p-value matrix -- perform differential expression analysis in each study", "Perform AW Fisher meta analysis using the multi-tissue mouse metabolism transcriptomic data", "Differential expression pattern (meta-pattern) detection.", "Calculate dissimilarity matrix", "Apply the tight clustering algorithm to get gene modules with unique meta-pattern", "Visualize the heatmap of the first meta-pattern module for all three tissues." ], "created": "2018-09-16 00:38:51", "modified": "2020-02-08 18:51:48", "commits": 6 } ], "_score": 4.698970004336019, "_indexed": false, "_nocasepkg": "awfisher", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/AWFisher", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.26.0", "date": "2026-09-29T10:11:02.000Z", "distro": "resolute", "arch": "aarch64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/9341db8d562f847d37f10a7cb78bf15795d038a52672c9d5538ae84ceb82fa07", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.7.0", "os": "linux", "version": "1.26.0", "date": "2026-09-29T10:12:20.000Z", "distro": "resolute", "arch": "x86_64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/aa3e86c04c232f876e4d5c3db03b318656f2b8fae4a71efdb5d5ea76b1ee464b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.6.1", "os": "linux", "version": "1.26.0", "date": "2026-09-29T10:10:43.000Z", "distro": "resolute", "arch": "aarch64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/edf30e73739a6bf7bccc006bb45f782ab638f7d2f0908af5a9840346520bde15", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.6.1", "os": "linux", "version": "1.26.0", "date": "2026-09-29T10:12:17.000Z", "distro": "resolute", "arch": "x86_64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/8d523ef26f78d10ea330b1ce516b6acd3d27887a925f23488a549ee0aed7a3be", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.5.3", "os": "mac", "version": "1.26.0", "date": "2026-09-29T11:23:38.000Z", "arch": "aarch64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/2460dedda40cca433220ac7e3bccbd16de8a20324eed8a40eaf35e1b63d79c4b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.5.3", "os": "mac", "version": "1.26.0", "date": "2026-09-29T11:25:30.000Z", "arch": "x86_64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/5c8749923fdbd15739dba7742f1d4df1f9c0a4c8b6a87a8d77e3a0be4568231a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.6.1", "os": "mac", "version": "1.26.0", "date": "2026-09-29T11:24:01.000Z", "arch": "aarch64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/f5e97ff6f64d39c75f9b283c6ba00e388016746e1c836734989272c901aa4ac0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.6.1", "os": "mac", "version": "1.26.0", "date": "2026-09-29T11:25:52.000Z", "arch": "x86_64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/097d581bd6a841772b0533f067ce3de0526cfefc47517f68ee72730d2386f9c3", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.6.0", "os": "wasm", "version": "1.26.0", "date": "2026-09-29T10:10:49.000Z", "arch": "emscripten", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/b59b39714afe083c95053260434fb3fe6b47e3324b397ab05585e9bf6b3a85ae", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.7.0", "os": "win", "version": "1.26.0", "date": "2026-09-29T10:12:13.000Z", "arch": "aarch64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/680df962b247a8b629f4317ada19e16b93c44004f1390354918ced5309f3b8e9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.7.0", "os": "win", "version": "1.26.0", "date": "2026-09-29T10:10:18.000Z", "arch": "x86_64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/2ac576bfce07136f6229b3c91f8c313b94c8957bf30c5b7981ac6d804585fe38", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.5.3", "os": "win", "version": "1.26.0", "date": "2026-09-29T10:10:00.000Z", "arch": "x86_64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/281d6396bfb931c92f22492458a6f5c7e4a8a16e8789b3d84fbdc2357d2d7eb9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.6.1", "os": "win", "version": "1.26.0", "date": "2026-09-29T10:11:40.000Z", "arch": "aarch64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/f45bbfa6dbf55dcd6638dc3e0d9130b17c224310ef75bf2d6998f3d4aebbdb3a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" }, { "r": "4.6.1", "os": "win", "version": "1.26.0", "date": "2026-09-29T10:09:49.000Z", "arch": "x86_64", "commit": "234ee80f885d9f586b7a40dbd810b8cdb4d79ae6", "fileid": "https://r2.ropensci.org/f2c05d994728134c681775ea8b6ca91c20ab4517379fe3c97d8c15791a9fb0b9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/36553412958" } ] }