{ "_id": "6a1699d7acfb0bcc41d7d9c9", "Package": "AnVILGCP", "Title": "The GCP R Client for the AnVIL", "Version": "1.6.2", "Date": "2026-04-24", "Authors@R": "c(\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\",\nc(\"aut\", \"cre\"), c(ORCID = \"0000-0002-3242-0582\")\n),\nperson(\"Nitesh\", \"Turaga\", , , \"aut\"),\nperson(\"Martin\", \"Morgan\", , , \"aut\", c(ORCID = \"0000-0002-5874-8148\"))\n)", "Description": "The package provides a set of functions to interact with\nthe Google Cloud Platform (GCP) services on the AnVIL platform.\nThe package is designed to use the API calls from the AnVIL\npackage. It coordinates AnVIL workspace functionality with\nnative GCP tools.", "biocViews": "Software, Infrastructure, ThirdPartyClient, DataImport", "VignetteBuilder": "knitr", "BugReports": "https://github.com/Bioconductor/AnVILGCP/issues", "URL": "https://github.com/Bioconductor/AnVILGCP", "License": "Artistic-2.0", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "Collate": "'av.R' 'avdata.R' 'gcp-class.R' 'avnotebooks-methods.R'\n'avtable-methods.R' 'avworkflow-methods.R' 'avworkflow.R'\n'avworkflow_configuration.R' 'avworkspace-methods.R' 'drs.R'\n'gcloud.R' 'gcloud_sdk.R' 'gcp-methods.R' 'gsutil.R'\n'has_avworkspace-methods.R' 'localize.R' 'utilities.R'", "Config/pak/sysreqs": "libicu-dev libssl-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-05-26 21:04:29 UTC", "RemoteUrl": "https://github.com/bioc/AnVILGCP", "RemoteRef": "RELEASE_3_23", "RemoteSha": "6d610c79f202715fabe273825dc81d140dcd2d1e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-27 07:06:12 UTC", "User": "root" }, "Author": "Marcel Ramos [aut, cre] (ORCID:\n),\nNitesh Turaga [aut],\nMartin Morgan [aut] (ORCID: )", "Maintainer": "Marcel Ramos ", "MD5sum": "b8ff14af163cc8090117913bf0e2de71", "_user": "bioc-release", "_type": "src", "_file": "AnVILGCP_1.6.2.tar.gz", "_fileid": "be0dbea25b8fa8d6f2435f00b1a8763e1091948dff23d378dd64c60fb2ce88da", "_filesize": 390919, "_sha256": "be0dbea25b8fa8d6f2435f00b1a8763e1091948dff23d378dd64c60fb2ce88da", "_created": "2026-05-27T07:06:12.000Z", "_published": "2026-05-27T07:14:31.940Z", "_jobs": [ { "job": 78025326311, "time": 160, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7234056734" }, { "job": 78025326333, "time": 157, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7234056141" }, { "job": 78025326345, "time": 164, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7234058272" }, { "job": 78025326350, "time": 85, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7234139353" }, { "job": 78025326411, "time": 109, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7234089622" }, { "job": 78024862557, "time": 203, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7234010297" }, { "job": 78025326336, "time": 115, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7234044791" }, { "job": 78025326369, "time": 114, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7234043977" }, { "job": 78025326400, "time": 115, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7234045090" }, { "job": 78025326317, "time": 87, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7234036789" } ], "_bioccheck": { "error": 0, "warning": 1, "note": 4 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26496177978", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/AnVILGCP", "_commit": { "id": "6d610c79f202715fabe273825dc81d140dcd2d1e", "author": "LiNk-NY ", "committer": "LiNk-NY ", "message": "version bump 1.6.2\n", "time": 1779829469 }, "_maintainer": { "name": "Marcel Ramos", "email": "marcel.ramos@sph.cuny.edu", "login": "link-ny", "bluesky": "@mramos148.bsky.social", "linkedin": "in/mramos148", "orcid": "0000-0002-3242-0582", "twitter": "@M2RuseR", "description": "Sr. Data Scientist @ CUNY School of Public Health: Waldron Lab & Bioconductor Core Team Member / \nR 📦 dev ", "uuid": 4392950 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.5.0", "role": "Depends" }, { "package": "AnVILBase", "role": "Imports" }, { "package": "BiocBaseUtils", "role": "Imports" }, { "package": "dplyr", "role": "Imports" }, { "package": "GCPtools", "version": ">= 0.99.4", "role": "Imports" }, { "package": "httr", "role": "Imports" }, { "package": "jsonlite", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "tibble", "role": "Imports" }, { "package": "tidyr", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "AnVIL", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "withr", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 5, "_updates": [ { "week": "2025-22", "n": 3 }, { "week": "2025-24", "n": 3 }, { "week": "2025-28", "n": 11 }, { "week": "2025-29", "n": 6 }, { "week": "2025-39", "n": 6 }, { "week": "2025-44", "n": 2 }, { "week": "2025-45", "n": 2 }, { "week": "2025-46", "n": 4 }, { "week": "2026-17", "n": 3 }, { "week": "2026-18", "n": 1 }, { "week": "2026-22", "n": 5 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.7.3", "bioc": "3.24" }, { "branch": "release", "version": "1.6.0", "bioc": "3.23" } ], "_topics": [ "software", "infrastructure", "thirdpartyclient", "dataimport", "u24hg010263" ], "_stars": 0, "_contributors": [ { "user": "link-ny", "count": 74, "uuid": 4392950 }, { "user": "jwokaty", "count": 8, "uuid": 1744257 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 286, "source": "https://www.bioconductor.org/packages/stats/bioc/AnVILGCP" }, "_devurl": "https://github.com/bioconductor/anvilgcp", "_searchresults": 38, "_rbuild": "4.6.0", "_assets": [ "extra/AnVILGCP.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_homeurl": "https://github.com/bioconductor/anvilgcp", "_realowner": "bioc", "_cranurl": false, "_exports": [ "avbackup", "avcopy", "avdata", "avdata_import", "avdisks", "avfiles_backup", "avfiles_ls", "avfiles_restore", "avfiles_rm", "avlist", "avnotebooks", "avnotebooks_delocalize", "avnotebooks_localize", "avremove", "avrestore", "avruntime", "avruntimes", "avstorage", "avtable", "avtable_delete", "avtable_delete_values", "avtable_import", "avtable_import_set", "avtable_import_status", "avtable_paged", "avtables", "avworkflow", "avworkflow_configuration_get", "avworkflow_configuration_inputs", "avworkflow_configuration_outputs", "avworkflow_configuration_set", "avworkflow_configuration_template", "avworkflow_configuration_update", "avworkflow_files", "avworkflow_info", "avworkflow_jobs", "avworkflow_localize", "avworkflow_name", "avworkflow_namespace", "avworkflow_run", "avworkflow_stop", "avworkflows", "avworkspace", "avworkspace_clone", "avworkspace_name", "avworkspace_namespace", "avworkspaces", "delocalize", "drs_hub", "drs_nci_crdc", "gcloud_access_token", "gcloud_account", "gcloud_cmd", "gcloud_help", "gcloud_project", "gcloud_storage", "gcloud_storage_buckets", "gcp", "gsutil_cat", "gsutil_exists", "gsutil_help", "gsutil_pipe", "gsutil_requesterpays", "gsutil_rsync", "gsutil_stat", "has_avworkspace", "localize" ], "_help": [ { "page": "av", "title": "Miscellaneous functions for interacting with AnVIL tables and files", "topics": [ "av", "avdisks", "avfiles_backup", "avfiles_ls", "avfiles_restore", "avfiles_rm", "avruntime", "avruntimes", "avtable_import_status", "avtable_paged" ] }, { "page": "avdata", "title": "Import data into the current workspace", "topics": [ "avdata", "avdata_import" ] }, { "page": "avnotebooks-methods", "title": "Notebook management", "topics": [ "avnotebooks", "avnotebooks,gcp-method", "avnotebooks-methods", "avnotebooks_delocalize", "avnotebooks_delocalize,gcp-method", "avnotebooks_localize", "avnotebooks_localize,gcp-method" ] }, { "page": "avtable-methods", "title": "Methods that work with the primary datasets in the DATA tab", "topics": [ "avtable", "avtable,gcp-method", "avtable-methods", "avtables", "avtables,gcp-method", "avtable_delete,gcp-method", "avtable_delete_values", "avtable_delete_values,gcp-method", "avtable_import", "avtable_import,gcp-method", "avtable_import_set", "avtable_import_set,gcp-method" ] }, { "page": "avworkflow_configuration", "title": "Workflow configuration", "topics": [ "avworkflow", "avworkflow_configurations", "avworkflow_configuration_get", "avworkflow_configuration_inputs", "avworkflow_configuration_outputs", "avworkflow_configuration_set", "avworkflow_configuration_template", "avworkflow_configuration_update", "avworkflow_name", "avworkflow_namespace", "print.avworkflow_configuration" ] }, { "page": "avworkflow-methods", "title": "AnVIL workflow methods", "topics": [ "avworkflow-methods", "avworkflow_jobs,gcp-method" ] }, { "page": "avworkflow", "title": "Workflow submissions and file outputs", "topics": [ "avworkflows", "avworkflow_files", "avworkflow_info", "avworkflow_localize", "avworkflow_run", "avworkflow_stop" ] }, { "page": "avworkspace-methods", "title": "AnVIL Workspace GCP methods", "topics": [ "avworkspace,gcp-method", "avworkspace-methods", "avworkspaces,gcp-method", "avworkspace_clone,gcp-method", "avworkspace_name,gcp-method", "avworkspace_namespace,gcp-method" ] }, { "page": "drs", "title": "DRS (Data Repository Service) URL management", "topics": [ "drs", "drs_hub", "drs_nci_crdc" ] }, { "page": "gcloud-defunct", "title": "gcloud command line utility interface (DEFUNCT)", "topics": [ "gcloud-defunct", "gcloud_access_token", "gcloud_account", "gcloud_cmd", "gcloud_exists", "gcloud_help", "gcloud_project", "gcloud_storage", "gcloud_storage_buckets" ] }, { "page": "gcp-class", "title": "GCP platform class", "topics": [ ".gcp", "gcp", "gcp-class" ] }, { "page": "gcp-methods", "title": "Methods compatible with the GCP platform class", "topics": [ "avbackup", "avbackup,gcp-method", "avcopy", "avcopy,gcp-method", "avlist", "avlist,gcp-method", "avremove", "avremove,gcp-method", "avrestore", "avrestore,gcp-method", "avstorage", "avstorage,gcp-method", "gcp-methods" ] }, { "page": "gsutil-deprecated", "title": "gsutil command line utility interface (DEPRECATED)", "topics": [ "gsutil-deprecated", "gsutil_cat", "gsutil_exists", "gsutil_help", "gsutil_pipe", "gsutil_requesterpays", "gsutil_rsync", "gsutil_stat" ] }, { "page": "has_avworkspace-methods", "title": "Helper to check AnVIL environment is set up to work with GCP", "topics": [ "has_avworkspace,gcp-method", "has_avworkspace-methods" ] }, { "page": "localize", "title": "Copy packages, folders, or files to or from google buckets.", "topics": [ "delocalize", "localize" ] } ], "_rundeps": [ "AnVILBase", "askpass", "BiocBaseUtils", "cli", "cpp11", "curl", "dplyr", "GCPtools", "generics", "glue", "httr", "httr2", "jsonlite", "lifecycle", "magrittr", "mime", "openssl", "pillar", "pkgconfig", "purrr", "R6", "rappdirs", "rlang", "stringi", "stringr", "sys", "tibble", "tidyr", "tidyselect", "utf8", "vctrs", "withr" ], "_vignettes": [ { "source": "AnVILGCPIntroduction.Rmd", "filename": "AnVILGCPIntroduction.html", "title": "Working with AnVIL on GCP", "author": "Nitesh Turaga, Vincent Carey, BJ Stubbs, Marcel Ramos, Martin Morgan", "engine": "knitr::rmarkdown", "headings": [ "Installation", "Additional Setup", "Use in the AnVIL cloud", "Local use", "Graphical interfaces", "Working with Google cloud-based resources", "Using gcloud_*() for account management", "Using gsutil_*() for file and bucket management", "Using av*() to work with AnVIL tables and data", "Tables, reference data, and persistent files", "Using avtable*() for accessing tables", "Using avdata() for accessing Workspace Data", "Using avstorage() and workspace files", "Using avnotebooks*() for notebook management", "Using avworkflows_*() for workflows", "Using avworkspace_*() for workspaces", "Session Info" ], "created": "2024-03-28 21:34:53", "modified": "2026-05-26 20:59:00", "commits": 9 } ], "_score": 5.797267540830717, "_indexed": false, "_nocasepkg": "anvilgcp", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/AnVILGCP", "_previous": "1.6.0", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.6.2", "date": "2026-05-27T07:08:47.000Z", "distro": "noble", "commit": "6d610c79f202715fabe273825dc81d140dcd2d1e", "fileid": "42035e040e90058f7fd2a1c23a0c7eae4693fa654e95fd2cd3fdeb037c12e55d", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26496177978" }, { "r": "4.6.0", "os": "linux", "version": "1.6.2", "date": "2026-05-27T07:08:55.000Z", "distro": "noble", "commit": "6d610c79f202715fabe273825dc81d140dcd2d1e", "fileid": "7683d2111bb6013fffa49893e206b5030105a09b2c5669b961e0db2d8cab59ba", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26496177978" }, { "r": "4.5.3", "os": "mac", "version": "1.6.2", "date": "2026-05-27T07:13:54.000Z", "commit": "6d610c79f202715fabe273825dc81d140dcd2d1e", "fileid": "bc0d8845e7bf191df7f6f90929c25b331e20598bb3d18ece06184c8d56b06cb9", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26496177978" }, { "r": "4.6.0", "os": "mac", "version": "1.6.2", "date": "2026-05-27T07:10:50.000Z", "commit": "6d610c79f202715fabe273825dc81d140dcd2d1e", "fileid": "2408c775dc2442c0b145b8f85c3975224f6bd2052cf00a6098405731c302a382", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26496177978" }, { "r": "4.6.0", "os": "wasm", "version": "1.6.2", "date": "2026-05-27T07:08:27.000Z", "commit": "6d610c79f202715fabe273825dc81d140dcd2d1e", "fileid": "d9f33f8b5875713feddddf226c0adc57c3b8bcbc2b92db643fdd20e1578e9a28", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26496177978" }, { "r": "4.7.0", "os": "win", "version": "1.6.2", "date": "2026-05-27T07:07:53.000Z", "commit": "6d610c79f202715fabe273825dc81d140dcd2d1e", "fileid": "b1c1380477d84891709629a8d9acd542eaf26915219c27d12759def6a4f62ab6", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26496177978" }, { "r": "4.5.3", "os": "win", "version": "1.6.2", "date": "2026-05-27T07:07:47.000Z", "commit": "6d610c79f202715fabe273825dc81d140dcd2d1e", "fileid": "587ab6e5b2e082be93c74eb2b78a37224e2f62d2c1ab9e9c0ad1531cdf9ea0af", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26496177978" }, { "r": "4.6.0", "os": "win", "version": "1.6.2", "date": "2026-05-27T07:07:33.000Z", "commit": "6d610c79f202715fabe273825dc81d140dcd2d1e", "fileid": "cda82da77e021cf8451614e481efbf8cfed362a07f158f23361ad1233b00614b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26496177978" } ] }