{ "_id": "6aaf1b133d719c1f8407d9c6", "Package": "AnVILWorkflow", "Title": "Run workflows implemented in Terra/AnVIL workspace", "Version": "1.12.1", "Date": "2023-4-23", "Authors@R": "c(person(given = \"Sehyun\",\nfamily = \"Oh\",\nrole = c(\"aut\", \"cre\"),\nemail = \"shbrief@gmail.com\",\ncomment = c(ORCID = \"0000-0002-9490-3061\")),\nperson(\"Marcel\", \"Ramos\", , \"marcel.ramos@sph.cuny.edu\", \"ctb\", c(ORCID = \"0000-0002-3242-0582\")),\nperson(\"Kai\", \"Gravel-Pucillo\", role = \"aut\"))", "Description": "The AnVIL is a cloud computing resource developed in part\nby the National Human Genome Research Institute. The main\ncloud-based genomics platform deported by the AnVIL project is\nTerra. The AnVILWorkflow package allows remote access to Terra\nimplemented workflows, enabling end-user to utilize Terra/\nAnVIL provided resources - such as data, workflows, and\nflexible/scalble computing resources - through the conventional\nR functions.", "License": "Artistic-2.0", "biocViews": "Infrastructure, Software", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.3", "URL": "https://github.com/shbrief/AnVILWorkflow", "BugReports": "https://github.com/shbrief/AnVILWorkflow/issues", "Config/pak/sysreqs": "cmake make libicu-dev libsecret-1-dev libuv1-dev\nlibssl-dev zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-09-19 17:30:32 UTC", "RemoteUrl": "https://github.com/bioc/AnVILWorkflow", "RemoteRef": "RELEASE_3_23", "RemoteSha": "9bff89f53bc08a784dbf44f30714d0bb6b5a4eee", "NeedsCompilation": "no", "Packaged": { "Date": "2026-09-19 23:25:30 UTC", "User": "root" }, "Author": "Sehyun Oh [aut, cre] (ORCID: ),\nMarcel Ramos [ctb] (ORCID: ),\nKai Gravel-Pucillo [aut]", "Maintainer": "Sehyun Oh ", "_user": "bioc-release", "_type": "src", "_file": "AnVILWorkflow_1.12.1.tar.gz", "_fileid": "https://r2.ropensci.org/9244949ddfa128f3ffc9a069e156f609bdcc3f7d391de79cac7517eff850298e", "_filesize": 1087496, "_sha256": "9244949ddfa128f3ffc9a069e156f609bdcc3f7d391de79cac7517eff850298e", "_expires": "2026-12-28T23:30:25.000Z", "_created": "2026-09-19T23:25:30.000Z", "_published": "2026-09-19T23:30:27.724Z", "_bioccheck": { "error": 0, "warning": 1, "note": 12 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/35475940837", "_status": "success", "_upstream": "https://github.com/bioc/AnVILWorkflow", "_commit": { "id": "9bff89f53bc08a784dbf44f30714d0bb6b5a4eee", "author": "Sehyun Oh ", "committer": "Sehyun Oh ", "message": "Migrate gcloud/gsutil calls to GCPtools for Bioc 3.23\n\nAnVILGCP 1.7.x removed the gcloud_* functions (fully migrated to\nGCPtools) and marked the gsutil_* functions defunct; gsutil_cp was\ndropped in favour of the avcopy generic. AnVIL no longer exports any\nof them. This caused 1 ERROR and 2 WARNINGs on the devel builder.\n\n* setCloudEnv(), cloneWorkspace(): call GCPtools::gcloud_exists(),\n gcloud_account() and gcloud_project() explicitly. Qualifying rather\n than importing avoids \"replacing previous import\" warnings on the\n release branch, where AnVILGCP still exports the deprecated shims.\n* .biobakery_currentInput(): AnVIL::gsutil_cat() -> GCPtools::gsutil_cat().\n AnVILGCP's copy is defunct and raises an error.\n* getOutput(): replace gsutil_cp with the avcopy generic.\n* .nonMetadataOutputs(): fix Rd cross-reference to avworkflow_files,\n which lives in AnVILGCP rather than AnVIL.\n* getAllDataTables(): use the has_avworkspace() example guard used\n elsewhere in the package; the previous guard called the now-removed\n AnVILGCP::gcloud_exists().\n* Add R/globals.R declaring the NSE column names used by dplyr verbs\n and the magrittr placeholder, clearing the \"no visible binding for\n global variable\" NOTE.\n* DESCRIPTION: add GCPtools to Imports and rmarkdown to Suggests.\n\nCo-Authored-By: Claude Opus 5 (1M context) \n", "time": 1789839032 }, "_maintainer": { "name": "Sehyun Oh", "email": "shbrief@gmail.com", "login": "shbrief", "linkedin": "in/sehyunoh", "twitter": "@drsehyun", "description": "Molecular Biologist & Bioinformatician", "uuid": 15724490, "orcid": "0000-0002-9490-3061" }, "_distro": "resolute", "_jobs": [ { "job": 105985503564, "time": 195, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "10593179606" }, { "job": 105985503497, "time": 248, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "10593084661" }, { "job": 105985503537, "time": 173, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "10593249368" }, { "job": 105985503560, "time": 82, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "10593084548" }, { "job": 105985503515, "time": 86, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": "10594351027" }, { "job": 105985120908, "time": 191, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "10594535661" }, { "job": 105985503487, "time": 132, 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