{
  "_id": "6a226ff5cd65a98ecbd486f5",
  "Package": "BasicSTARRseq",
  "Type": "Package",
  "Title": "Basic peak calling on STARR-seq data",
  "Version": "1.40.0",
  "Date": "2025-07-24",
  "Author": "Annika Buerger",
  "Maintainer": "Annika Buerger <annika.buerger@ukmuenster.de>",
  "Description": "Basic peak calling on STARR-seq data based on a method\nintroduced in \"Genome-Wide Quantitative Enhancer Activity Maps\nIdentified by STARR-seq\" Arnold et al. Science. 2013 Mar\n1;339(6123):1074-7. doi: 10.1126/science. 1232542. Epub 2013\nJan 17.",
  "License": "LGPL-3",
  "VignetteBuilder": "knitr",
  "biocViews": "PeakDetection, GeneRegulation, FunctionalPrediction,\nFunctionalGenomics, Coverage",
  "NeedsCompilation": "no",
  "Config/pak/sysreqs": "libbz2-dev liblzma-dev xz-utils zlib1g-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:42:35 UTC",
  "RemoteUrl": "https://github.com/bioc/BasicSTARRseq",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846",
  "Packaged": {
    "Date": "2026-06-05 06:36:48 UTC",
    "User": "root"
  },
  "MD5sum": "1cdc3acd67e7ba842cde0ea13043e456",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "BasicSTARRseq_1.40.0.tar.gz",
  "_fileid": "9aba6cc0e8fb5dcbf9d2258fd5875376ca5e4f9c7489ed735ab8498f028217ed",
  "_filesize": 497611,
  "_sha256": "9aba6cc0e8fb5dcbf9d2258fd5875376ca5e4f9c7489ed735ab8498f028217ed",
  "_created": "2026-06-05T06:36:48.000Z",
  "_published": "2026-06-05T06:43:01.074Z",
  "_jobs": [
    {
      "job": 79677047696,
      "time": 171,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7430400408"
    },
    {
      "job": 79677047748,
      "time": 284,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7430427613"
    },
    {
      "job": 79677047715,
      "time": 321,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7430436144"
    },
    {
      "job": 79677047754,
      "time": 162,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7430398376"
    },
    {
      "job": 79677047719,
      "time": 201,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7430407469"
    },
    {
      "job": 79676558883,
      "time": 242,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430357304"
    },
    {
      "job": 79677047698,
      "time": 145,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7430394327"
    },
    {
      "job": 79677047740,
      "time": 199,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7430406862"
    },
    {
      "job": 79677047733,
      "time": 219,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7430411884"
    },
    {
      "job": 79677047842,
      "time": 196,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7430406303"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 1,
    "note": 10
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999510251",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/BasicSTARRseq",
  "_commit": {
    "id": "62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380155
  },
  "_maintainer": {
    "name": "Annika Buerger",
    "email": "annika.buerger@ukmuenster.de",
    "login": "arbuerger",
    "description": "",
    "uuid": 30867644
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "GenomicRanges",
      "role": "Depends"
    },
    {
      "package": "GenomicAlignments",
      "role": "Depends"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "Seqinfo",
      "role": "Imports"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-30",
      "n": 1
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.41.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.40.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "peakdetection",
    "generegulation",
    "functionalprediction",
    "functionalgenomics",
    "coverage"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 408,
    "source": "https://www.bioconductor.org/packages/stats/bioc/BasicSTARRseq"
  },
  "_mentions": 1,
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BasicSTARRseq.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "control",
    "control<-",
    "getPeaks",
    "sample",
    "sample<-",
    "STARRseqData"
  ],
  "_help": [
    {
      "page": "getPeaks",
      "title": "Peak calling on STARR-seq data",
      "topics": [
        "getPeaks",
        "getPeaks,STARRseqData-method"
      ]
    },
    {
      "page": "STARRseqData-class",
      "title": "Class '\"STARRseqData\"'",
      "topics": [
        "control",
        "control,STARRseqData-method",
        "control<-",
        "control<-,STARRseqData,GRanges-method",
        "sample",
        "sample,STARRseqData-method",
        "sample<-",
        "sample<-,STARRseqData,GRanges-method",
        "STARRseqData",
        "STARRseqData,character,character,logical-method",
        "STARRseqData,GRanges,GRanges,ANY-method",
        "STARRseqData,GRanges,GRanges-method",
        "STARRseqData-class"
      ]
    }
  ],
  "_rundeps": [
    "abind",
    "BH",
    "Biobase",
    "BiocGenerics",
    "BiocParallel",
    "Biostrings",
    "bitops",
    "cigarillo",
    "codetools",
    "cpp11",
    "crayon",
    "DelayedArray",
    "formatR",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomicAlignments",
    "GenomicRanges",
    "IRanges",
    "lambda.r",
    "lattice",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "Rhtslib",
    "Rsamtools",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "snow",
    "SparseArray",
    "SummarizedExperiment",
    "XVector"
  ],
  "_vignettes": [
    {
      "source": "BasicSTARRseq.rnw",
      "filename": "BasicSTARRseq.pdf",
      "title": "A R/Bioconductor package for basic peak calling on STARR-seq data",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2016-02-09 16:40:36",
      "modified": "2016-02-09 16:40:36",
      "commits": 1
    }
  ],
  "_score": 3.4771212547196626,
  "_indexed": false,
  "_nocasepkg": "basicstarrseq",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/BasicSTARRseq",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.40.0",
      "date": "2026-06-05T06:39:52.000Z",
      "distro": "noble",
      "commit": "62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846",
      "fileid": "540f770a72991a48ffcf018574527ab13f475c0bc33f754c724a2cb98954e3a4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999510251"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.40.0",
      "date": "2026-06-05T06:40:22.000Z",
      "distro": "noble",
      "commit": "62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846",
      "fileid": "1d0fa93e00073b11326731317e8a6c65cd8ca3b325443711dbdfb2c4cbd7d451",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999510251"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.40.0",
      "date": "2026-06-05T06:38:32.000Z",
      "commit": "62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846",
      "fileid": "c40204227b8bb6a8f7416610d38e494e47b18ae4123131f63dd4a3ad7b30932d",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999510251"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.40.0",
      "date": "2026-06-05T06:38:52.000Z",
      "commit": "62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846",
      "fileid": "9054ea9aefec36b1053969b60dd27eddcdffbd1018a8ddd3a063e1c86220dda0",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999510251"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.40.0",
      "date": "2026-06-05T06:39:42.000Z",
      "commit": "62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846",
      "fileid": "dda2692e6c61ad3d69bb891acfe3d98f10e68b48ff022ebb3ca824e38068f421",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999510251"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.40.0",
      "date": "2026-06-05T06:38:29.000Z",
      "commit": "62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846",
      "fileid": "817e78aadb86e7c80cdb5534bd5f198592af166b28a0b47a0bdecc5d5361bb75",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999510251"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.40.0",
      "date": "2026-06-05T06:38:38.000Z",
      "commit": "62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846",
      "fileid": "2ae129bc54aaca4d336f15d635138c8c27de2cd89f1ae648c3ed70201cf0d90e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999510251"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.40.0",
      "date": "2026-06-05T06:38:30.000Z",
      "commit": "62a053a4c0dd22dd5ac6eb08c5f5f9c30148f846",
      "fileid": "79006fa3dbfb92205c78b5dbe8ab2699842cc0a6a1327bfaf2fb30ec2614eb5a",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26999510251"
    }
  ]
}