{ "_id": "6ae848622e87f76f20ace442", "Package": "BatChef", "Type": "Package", "Title": "Single-cell RNA-seq batch effects correction methods interface", "Version": "1.0.2", "Authors@R": "c(\nperson(\"Elena\", \"Zuin\", email = \"elena.zuin.3@phd.unipd.it\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0009-0006-3060-4835\",\naffiliation = \"Department of Biology, University of Padova\")),\nperson(\"Chiara\", \"Romualdi\", role = \"ctb\",\ncomment = c(affiliation = \"Department of Biology, University of Padova\")),\nperson(\"Davide\", \"Risso\", role = \"ctb\",\ncomment = c(affiliation = \"Department of Statistical Sciences, University of Padova\")),\nperson(\"Gabriele\", \"Sales\", role = \"ctb\",\ncomment = c(affiliation = \"Department of Biology, University of Padova\")))", "Description": "This package implements a variety of methods for batch\ncorrection in single-cell RNA sequencing (scRNA-seq) data. It\nincorporates quantitative metrics (e.g. Wasserstein distance,\nAdjusted Rand Index) to evaluate their performance.\nFurthermore, the package assists users in identifying and\napplying the optimal method for specific datasets.", "License": "GPL (>= 3)", "Encoding": "UTF-8", "biocViews": "BatchEffect, SingleCell, Sequencing", "BugReports": "https://github.com/zuinelena3/BatChef/issues", "URL": "https://github.com/zuinelena3/BatChef", "VignetteBuilder": "knitr", "Config/testthat/edition": "3", "Config/roxygen2/version": "8.0.0", "Config/pak/sysreqs": "libabsl-dev libcairo2-dev cmake libfontconfig1-dev\nlibfreetype6-dev libfribidi-dev libgdal-dev gdal-bin\nlibgeos-dev git libglpk-dev make libharfbuzz-dev libhdf5-dev\nlibicu-dev libjpeg-dev libpng-dev libtiff-dev libuv1-dev\nlibwebp-dev libxml2-dev libssl-dev patch libproj-dev python3\nlibsqlite3-dev libudunits2-dev zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-06-26 09:37:47 UTC", "RemoteUrl": 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