{
  "_id": "6a212536cd65a98ecbd20a9b",
  "Package": "BayesKnockdown",
  "Title": "BayesKnockdown: Posterior Probabilities for Edges from Knockdown\nData",
  "Version": "1.38.0",
  "Date": "2016-06-28",
  "Author": "William Chad Young",
  "Maintainer": "William Chad Young <wmchad@uw.edu>",
  "Description": "A simple, fast Bayesian method for computing posterior\nprobabilities for relationships between a single predictor\nvariable and multiple potential outcome variables,\nincorporating prior probabilities of relationships. In the\ncontext of knockdown experiments, the predictor variable is the\nknocked-down gene, while the other genes are potential targets.\nCan also be used for differential expression/2-class data.",
  "License": "GPL-3",
  "biocViews": "NetworkInference, GeneExpression, GeneTarget, Network,\nBayesian",
  "LazyData": "true",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:43:58 UTC",
  "RemoteUrl": "https://github.com/bioc/BayesKnockdown",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "c5bb2ca7d0196f21468da76a15bfed353fec3f58",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-04 07:09:10 UTC",
    "User": "root"
  },
  "MD5sum": "5a66e9ba531d790f39e3d59aa024f689",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "BayesKnockdown_1.38.0.tar.gz",
  "_fileid": "495a37331daa28f14fbd631315c78dd693ca2735713ba7a5984a7a120792cb6b",
  "_filesize": 211819,
  "_sha256": "495a37331daa28f14fbd631315c78dd693ca2735713ba7a5984a7a120792cb6b",
  "_created": "2026-06-04T07:09:10.000Z",
  "_published": "2026-06-04T07:11:50.003Z",
  "_jobs": [
    {
      "job": 79467843310,
      "time": 130,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7405211047"
    },
    {
      "job": 79467843280,
      "time": 110,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7405205525"
    },
    {
      "job": 79467843283,
      "time": 125,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405209720"
    },
    {
      "job": 79467843286,
      "time": 91,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7405200427"
    },
    {
      "job": 79467843293,
      "time": 102,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405202889"
    },
    {
      "job": 79467412394,
      "time": 192,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405174486"
    },
    {
      "job": 79467843357,
      "time": 89,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405199761"
    },
    {
      "job": 79467843355,
      "time": 70,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7405194298"
    },
    {
      "job": 79467843373,
      "time": 83,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7405198152"
    },
    {
      "job": 79467843326,
      "time": 79,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7405197398"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 1,
    "note": 9
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26936483180",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/BayesKnockdown",
  "_commit": {
    "id": "c5bb2ca7d0196f21468da76a15bfed353fec3f58",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380238
  },
  "_maintainer": {
    "name": "William Chad Young",
    "email": "wmchad@uw.edu"
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.3",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "Biobase",
      "role": "Imports"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.39.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.38.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "networkinference",
    "geneexpression",
    "genetarget",
    "network",
    "bayesian"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 436,
    "source": "https://www.bioconductor.org/packages/stats/bioc/BayesKnockdown"
  },
  "_searchresults": 1,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BayesKnockdown.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "BayesKnockdown",
    "BayesKnockdown.diffExp",
    "BayesKnockdown.es"
  ],
  "_datasets": [
    {
      "name": "lincs.kd",
      "title": "LINCS L1000 Knockdown Example Dataset",
      "object": "lincs.kd",
      "class": [
        "matrix",
        "array"
      ],
      "fields": {},
      "rows": 21,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "BayesKnockdown",
      "title": "Posterior Probabilities for Knockdown Data",
      "topics": [
        "BayesKnockdown"
      ]
    },
    {
      "page": "BayesKnockdown.diffExp",
      "title": "Posterior Probabilities for 2-class Data",
      "topics": [
        "BayesKnockdown.diffExp"
      ]
    },
    {
      "page": "BayesKnockdown.es",
      "title": "Posterior Probabilities for ExpressionSet Data",
      "topics": [
        "BayesKnockdown.es"
      ]
    },
    {
      "page": "lincs.kd",
      "title": "LINCS L1000 Knockdown Example Dataset",
      "topics": [
        "lincs.kd"
      ]
    }
  ],
  "_rundeps": [
    "Biobase",
    "BiocGenerics",
    "generics"
  ],
  "_vignettes": [
    {
      "source": "BayesKnockdown.rnw",
      "filename": "BayesKnockdown.pdf",
      "title": "networkBMA",
      "engine": "utils::Sweave",
      "headings": [],
      "created": "2016-07-22 20:40:07",
      "modified": "2016-07-22 20:40:07",
      "commits": 1
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": false,
  "_nocasepkg": "bayesknockdown",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/BayesKnockdown",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-06-04T07:11:01.000Z",
      "distro": "noble",
      "commit": "c5bb2ca7d0196f21468da76a15bfed353fec3f58",
      "fileid": "f455f2ef48f4d4ff5eb30f5e280ff1982aec0dd48b4061462863e25eae1837bb",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26936483180"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.38.0",
      "date": "2026-06-04T07:11:16.000Z",
      "distro": "noble",
      "commit": "c5bb2ca7d0196f21468da76a15bfed353fec3f58",
      "fileid": "2671d33fd2a0781094306bde21dd5faf1cf9509ab6b9bcc8389431c55df778a7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26936483180"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-06-04T07:10:44.000Z",
      "commit": "c5bb2ca7d0196f21468da76a15bfed353fec3f58",
      "fileid": "1efae2f6b5a8954315a5667f8d7aa326df641734eb5038c12706090e6ad954e0",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26936483180"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.38.0",
      "date": "2026-06-04T07:10:47.000Z",
      "commit": "c5bb2ca7d0196f21468da76a15bfed353fec3f58",
      "fileid": "acb7dbc162ed48598f959c7dbaa3c3320b7779f436981978622fc9c9d3a200a7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26936483180"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.38.0",
      "date": "2026-06-04T07:10:54.000Z",
      "commit": "c5bb2ca7d0196f21468da76a15bfed353fec3f58",
      "fileid": "cbfd0ea5f7eb3cee04171d7d094e7888e56c58df17d937e9d1d529f8549192ff",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26936483180"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-06-04T07:10:17.000Z",
      "commit": "c5bb2ca7d0196f21468da76a15bfed353fec3f58",
      "fileid": "05fd6538210398b711ebd23b2aff09c504b67a0af100ebbeb9b8a8e1b82f0ee2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26936483180"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-06-04T07:10:29.000Z",
      "commit": "c5bb2ca7d0196f21468da76a15bfed353fec3f58",
      "fileid": "f3d56e4fc61243420d929016e64417d0237536c37771c63e5a6b4051792c342d",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26936483180"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.38.0",
      "date": "2026-06-04T07:10:23.000Z",
      "commit": "c5bb2ca7d0196f21468da76a15bfed353fec3f58",
      "fileid": "1bd6358c9e2c03e550103b4bb2a32ceddbfcfd2bff43109211106f044e04fedf",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26936483180"
    }
  ]
}