{ "_id": "6a1fdd05b401979e7343848e", "Package": "BicARE", "Version": "1.70.0", "Date": "2008-06-05", "Title": "Biclustering Analysis and Results Exploration", "Author": "Pierre Gestraud", "Maintainer": "Pierre Gestraud ", "Description": "Biclustering Analysis and Results Exploration.", "License": "GPL-2", "URL": "http://bioinfo.curie.fr", "biocViews": "Microarray, Transcription, Clustering", "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:33:31 UTC", "RemoteUrl": "https://github.com/bioc/BicARE", "RemoteRef": "RELEASE_3_23", "RemoteSha": "b7f381426d610118688b2a979e3da1fca845c81a", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-06-03 07:42:39 UTC", "User": "root" }, "MD5sum": "db42c646a79d6cadac059ee6410c3b98", "_user": "bioc-release", "_type": "src", "_file": "BicARE_1.70.0.tar.gz", "_fileid": "40d114fad8c46c83a9a16bb99cbfe1f2f4158b2121dd950e23637c15061613f8", "_filesize": 445314, "_sha256": "40d114fad8c46c83a9a16bb99cbfe1f2f4158b2121dd950e23637c15061613f8", "_created": "2026-06-03T07:42:39.000Z", "_published": "2026-06-03T07:51:33.293Z", "_jobs": [ { "job": 79245649709, "time": 161, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7378588669" }, { "job": 79245649831, "time": 294, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7378636484" }, { "job": 79245649751, "time": 326, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7378646913" }, { "job": 79245649739, "time": 278, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7378631787" }, { "job": 79245649765, "time": 258, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7378623570" }, { "job": 79245649742, "time": 264, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7378624338" }, { "job": 79245649757, "time": 398, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "7378670028" }, { "job": 79245649744, "time": 264, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7378625248" }, { "job": 79245649722, "time": 478, "config": "macos-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7378698545" }, { "job": 79245027054, "time": 237, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7378535396" }, { "job": 79245649713, "time": 124, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7378577018" }, { "job": 79245649726, "time": 238, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7378615956" }, { "job": 79245649711, "time": 224, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7378611015" }, { "job": 79245649733, "time": 261, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7378624277" } ], "_bioccheck": { "error": 1, "warning": 5, "note": 12 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/BicARE", "_commit": { "id": "b7f381426d610118688b2a979e3da1fca845c81a", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379611 }, "_maintainer": { "name": "Pierre Gestraud", "email": "pierre.gestraud@curie.fr", "login": "pieges", "description": "", "uuid": 14978679 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 1.8.0", "role": "Depends" }, { "package": "Biobase", "version": ">= 2.5.5", "role": "Depends" }, { "package": "multtest", "role": "Depends" }, { "package": "GSEABase", "role": "Depends" }, { "package": "GO.db", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "hgu95av2", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 1, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.71.0", "bioc": "3.24" }, { "branch": "release", "version": "1.70.0", "bioc": "3.23" } ], "_topics": [ "microarray", "transcription", "clustering" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 548, "source": "https://www.bioconductor.org/packages/stats/bioc/BicARE" }, "_mentions": 1, "_searchresults": 2, "_rbuild": "4.6.0", "_assets": [ "extra/BicARE.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "bicluster", "FLOC", "makeReport", "residue", "testAnnot", "testSet" ], "_datasets": [ { "name": "sample.bicData", "title": "Example data set for BicARE", "object": "sample.bicData", "file": "sample.bicData.RData", "class": [ "ExpressionSet" ], "fields": [], "table": false, "tojson": false }, { "name": "sample.biclustering", "title": "Example biclustering object", "object": "sample.biclustering", "file": "sample.biclustering.RData", "class": [ "biclustering" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "BicARE-package", "title": "BicARE", "topics": [ "BicARE-package", "BicARE" ] }, { "page": "bicluster", "title": "Extract a bicluster", "topics": [ "bicluster" ] }, { "page": "FLOC", "title": "Performs the FLOC algorithm", "topics": [ "FLOC" ] }, { "page": "makeReport", "title": "Export the results as html files", "topics": [ "makeReport" ] }, { "page": "residue", "title": "Residue of a matrix", "topics": [ "residue" ] }, { "page": "sample.bicData", "title": "Example data set for BicARE", "topics": [ "sample.bicData" ] }, { "page": "sample.biclustering", "title": "Example biclustering object", "topics": [ "sample.biclustering" ] }, { "page": "testAnnot", "title": "Find samples annotations over-represented covariates in biclusters", "topics": [ "testAnnot" ] }, { "page": "testSet", "title": "Find gene sets that are enriched in a bicluster", "topics": [ "testSet" ] } ], "_rundeps": [ "annotate", "AnnotationDbi", "askpass", "Biobase", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "generics", "glue", "GO.db", "graph", "GSEABase", "httr", "IRanges", "jsonlite", "KEGGREST", "lattice", "lifecycle", "MASS", "Matrix", "memoise", "mime", "multtest", "openssl", "pkgconfig", "png", "R6", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "survival", "sys", "vctrs", "XML", "xtable", "XVector" ], "_vignettes": [ { "source": "BicARE.Rnw", "filename": "BicARE.pdf", "title": "BicARE", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:06:13", "modified": "2013-11-01 20:06:13", "commits": 1 } ], "_score": 3.778151250383644, "_indexed": false, "_nocasepkg": "bicare", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/BicARE", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.70.0", "date": "2026-06-03T07:45:51.000Z", "distro": "noble", "arch": "aarch64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "282d707b354da392b2a142e35125a61205a8e6722e0064ad74826f3e20821367", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.7.0", "os": "linux", "version": "1.70.0", "date": "2026-06-03T07:46:04.000Z", "distro": "noble", "arch": "x86_64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "b86befae8cc197c0bb8db1250ea0f461fd3cfb2be5620e6208c05ef677ff89a2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.6.0", "os": "linux", "version": "1.70.0", "date": "2026-06-03T07:45:34.000Z", "distro": "noble", "arch": "aarch64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "c69d79c14532916c8b151714377f7f79e84a30ea97e166b069558496e01f8567", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.6.0", "os": "linux", "version": "1.70.0", "date": "2026-06-03T07:45:05.000Z", "distro": "noble", "arch": "x86_64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "d83816062f719278afba81079164ee1b83269af7d598d2dcd94a0d84697f290e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.5.3", "os": "mac", "version": "1.70.0", "date": "2026-06-03T07:45:08.000Z", "arch": "aarch64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "d62b6467e01f1ae506075f9339fcb8c6eb79c0985feca925410029d91c51a23b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.5.3", "os": "mac", "version": "1.70.0", "date": "2026-06-03T07:46:05.000Z", "arch": "x86_64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "f76f548cbd2f7aee5ecbab7d9b3be9b2d418eb4ab841833704939b07b76dd0df", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.6.0", "os": "mac", "version": "1.70.0", "date": "2026-06-03T07:45:12.000Z", "arch": "aarch64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "e734a566ad68506504244bdfbb26de6f0e69aab0dc12c772496a5de5d03d33e0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.6.0", "os": "mac", "version": "1.70.0", "date": "2026-06-03T07:46:39.000Z", "arch": "x86_64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "f9691634c71e7c4e441016a1f08139e1e42c52310068eb72f94e166dbcc1cf29", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.6.0", "os": "wasm", "version": "1.70.0", "date": "2026-06-03T07:45:08.000Z", "arch": "emscripten", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "071e70895217e70ce090bc361412947c562c3550907765c6c652146c31620e00", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.7.0", "os": "win", "version": "1.70.0", "date": "2026-06-03T07:44:19.000Z", "arch": "x86_64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "b3bf9564eed29ab015c961d79f8c5452df062aa270fcb9421587974bff60f5c6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.5.3", "os": "win", "version": "1.70.0", "date": "2026-06-03T07:44:09.000Z", "arch": "x86_64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "b27da31e4ea1cf112e55c48eadce5d31ce5c5c315061f36c2ac4a3b9bfa8a926", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" }, { "r": "4.6.0", "os": "win", "version": "1.70.0", "date": "2026-06-03T07:44:16.000Z", "arch": "x86_64", "commit": "b7f381426d610118688b2a979e3da1fca845c81a", "fileid": "a075c947444e5544fea2edfd5fc959d93dd1bfb07d761394e3f04b593f478b2e", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26870686366" } ] }