{
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  "Type": "Package",
  "Title": "Bio- and biomedical imaging dataset for machine learning and\ndeep learning (for ExperimentHub)",
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  "Encoding": "UTF-8",
  "Authors@R": "c(\nperson (given = \"Satoshi\", family = \"Kume\",\nrole = c(\"aut\", \"cre\"),\nemail = \"satoshi.kume.1984@gmail.com\",\ncomment = c(ORCID = \"0000-0001-7481-2843\")),\nperson(given = \"Kozo\", family = \"Nishida\",\nrole = c(\"aut\"),\nemail = \"kozo.nishida@gmail.com\",\ncomment = c(ORCID = \"0000-0001-8501-7319\"))\n)",
  "Description": "The package provides a bioimage dataset for the image\nanalysis using machine learning and deep learning. The dataset\nincludes microscopy imaging data with supervised labels. The\ndata is provided as R list data that can be loaded to\nKeras/tensorflow in R.",
  "VignetteBuilder": "knitr",
  "License": "Artistic-2.0",
  "URL": "https://kumes.github.io/BioImageDbs/",
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  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:35:08 UTC",
  "RemoteUrl": "https://github.com/bioc/BioImageDbs",
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  "Packaged": {
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    "User": "root"
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  "Author": "Satoshi Kume [aut, cre] (ORCID:\n<https://orcid.org/0000-0001-7481-2843>),\nKozo Nishida [aut] (ORCID: <https://orcid.org/0000-0001-8501-7319>)",
  "Maintainer": "Satoshi Kume <satoshi.kume.1984@gmail.com>",
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  "_created": "2026-10-10T11:16:29.000Z",
  "_published": "2026-10-10T11:21:44.244Z",
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      "source": "BioImageDbs.Rmd",
      "filename": "BioImageDbs.html",
      "title": "Providing Bioimage Dataset for ExperimentHub",
      "author": "Satoshi Kume",
      "engine": "knitr::rmarkdown",
      "headings": [
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        "Fetch Bioimage Datasets from ExperimentHub",
        "5D Arrays from the ExperimentHub",
        "4D Arrays from the ExperimentHub",
        "Visualization of gif images from the ExperimentHub",
        "A simple execution command using Keras/Tensorflow",
        "About the imaging dataset and its metadata in BioImageDbs",
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        "References"
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      "filename": "BioImageBbs_Datasets.html",
      "title": "The BioImageBbs Datasets",
      "author": "Satoshi Kume",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Fetch Bioimage Datasets from ExperimentHub",
        "ExperimentHub package",
        "Simaple query",
        "About datasets",
        "EM_id0001: Mouse brain neurons (5D Array / Tensor)",
        "EM_id0002: Drosophila brain neurons (5D Array / Tensor)",
        "EM_id0003: J558L cells (4D Array / Tensor)",
        "EM_id0004: primary human T cells (4D Array / Tensor)",
        "EM_id0005: Mouse Kidney 2D imaging (4D Array / Tensor)",
        "EM_id0006: Rat Liver 2D imaging (4D Array / Tensor)",
        "EM_id0007: Mouse Kidney MultiScale images (4D Array / Tensor)",
        "EM_id0008: Human NB4 cells (4D Array / Tensor)",
        "EM_id0009: Murine BMMC cells (4D Array / Tensor)",
        "EM_id0010: Human Blast cells (4D Array / Tensor)",
        "EM_id0011: human T-cell line Jurkat cells (4D Array / Tensor)",
        "LM_id0001: HeLa cells (4D Array / Tensor)",
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        "LM_id0003: GFP-GOWT1 mouse stem cells (4D Array / Tensor)",
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      "modified": "2021-11-11 14:29:06",
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