{
  "_id": "6a1a79f21d7bb097a09d341c",
  "Package": "BiocParallel",
  "Type": "Package",
  "Title": "Bioconductor facilities for parallel evaluation",
  "Version": "1.46.0",
  "Authors@R": "c(\nperson(\"Jiefei\", \"Wang\",\nemail = \"jiefei0804@gmail.com\",\nrole = c(\"aut\", \"cre\")),\nperson(\"Martin\", \"Morgan\", email = \"mtmorgan.bioc@gmail.com\", role=\"aut\"),\nperson(\"Valerie\", \"Obenchain\", role=\"aut\"),\nperson(\"Michel\", \"Lang\", email=\"michellang@gmail.com\", role=\"aut\"),\nperson(\"Ryan\", \"Thompson\", email=\"rct@thompsonclan.org\", role=\"aut\"),\nperson(\"Nitesh\", \"Turaga\", role=\"aut\"),\nperson(\"Aaron\", \"Lun\", role = \"ctb\"),\nperson(\"Henrik\", \"Bengtsson\", role = \"ctb\"),\nperson(\"Madelyn\", \"Carlson\", role = \"ctb\",\ncomment = \"Translated 'Random Numbers' vignette from Sweave to RMarkdown / HTML.\"\n),\nperson(\"Phylis\", \"Atieno\", role = \"ctb\",\ncomment = \"Translated 'Introduction to BiocParallel' vignette from Sweave to Rmarkdown / HTML.\"\n),\nperson(\n\"Sergio\", \"Oller\", role = \"ctb\",\ncomment = c(\n\"Improved bpmapply() efficiency.\",\n\"ORCID\" = \"0000-0002-8994-1549\"\n)\n))",
  "Description": "This package provides modified versions and novel\nimplementation of functions for parallel evaluation, tailored\nto use with Bioconductor objects.",
  "URL": "https://github.com/Bioconductor/BiocParallel",
  "BugReports": "https://github.com/Bioconductor/BiocParallel/issues",
  "biocViews": "Infrastructure",
  "License": "GPL-2 | GPL-3 | BSL-1.0",
  "SystemRequirements": "C++11",
  "Collate": "AllGenerics.R DeveloperInterface.R prototype.R bploop.R\nErrorHandling.R log.R bpbackend-methods.R bpisup-methods.R\nbplapply-methods.R bpiterate-methods.R bpstart-methods.R\nbpstop-methods.R BiocParallelParam-class.R bpmapply-methods.R\nbpschedule-methods.R bpvec-methods.R bpvectorize-methods.R\nbpworkers-methods.R bpaggregate-methods.R bpvalidate.R\nSnowParam-class.R MulticoreParam-class.R\nTransientMulticoreParam-class.R register.R SerialParam-class.R\nDoparParam-class.R SnowParam-utils.R BatchtoolsParam-class.R\nprogress.R ipcmutex.R worker-number.R utilities.R rng.R\nbpinit.R reducer.R worker.R bpoptions.R cpp11.R\nBiocParallel-defunct.R",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.1.2",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:37:04 UTC",
  "RemoteUrl": "https://github.com/bioc/BiocParallel",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "a331dfd2695daec754304505bdbd7358eef009fa",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-05-29 06:21:39 UTC",
    "User": "root"
  },
  "Author": "Jiefei Wang [aut, cre],\nMartin Morgan [aut],\nValerie Obenchain [aut],\nMichel Lang [aut],\nRyan Thompson [aut],\nNitesh Turaga [aut],\nAaron Lun [ctb],\nHenrik Bengtsson [ctb],\nMadelyn Carlson [ctb] (Translated 'Random Numbers' vignette from Sweave\nto RMarkdown / HTML.),\nPhylis Atieno [ctb] (Translated 'Introduction to BiocParallel' vignette\nfrom Sweave to Rmarkdown / HTML.),\nSergio Oller [ctb] (Improved bpmapply() efficiency., ORCID:\n<https://orcid.org/0000-0002-8994-1549>)",
  "Maintainer": "Jiefei Wang <jiefei0804@gmail.com>",
  "MD5sum": "9c255c81c07241f5e3c0be5e14240683",
  "_user": "bioc-release",
  "_type": "src",
  "_file": "BiocParallel_1.46.0.tar.gz",
  "_fileid": "e1ae89774597f605501c3ef4c47474b01a29abf14f7457c5068361f309af2f1d",
  "_filesize": 539955,
  "_sha256": "e1ae89774597f605501c3ef4c47474b01a29abf14f7457c5068361f309af2f1d",
  "_created": "2026-05-29T06:21:39.000Z",
  "_published": "2026-05-30T05:47:30.566Z",
  "_jobs": [
    {
      "job": 78626304831,
      "time": 228,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7284464276"
    },
    {
      "job": 78626304738,
      "time": 425,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7284509121"
    },
    {
      "job": 78626304758,
      "time": 530,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7284533741"
    },
    {
      "job": 78626304781,
      "time": 437,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7284511857"
    },
    {
      "job": 78626304763,
      "time": 546,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7284537516"
    },
    {
      "job": 78626304644,
      "time": 385,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7305805008"
    },
    {
      "job": 78626304882,
      "time": 614,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7285019107"
    },
    {
      "job": 78626304642,
      "time": 353,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7305796992"
    },
    {
      "job": 78626304783,
      "time": 673,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7285029885"
    },
    {
      "job": 78626304566,
      "time": 327,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284412762"
    },
    {
      "job": 78626304733,
      "time": 190,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7284455352"
    },
    {
      "job": 78626304789,
      "time": 487,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "7284523480"
    },
    {
      "job": 78626304807,
      "time": 501,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "7284526625"
    },
    {
      "job": 78626304754,
      "time": 547,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "NOTE",
      "artifact": "7284537982"
    }
  ],
  "_bioccheck": {
    "error": 0,
    "warning": 4,
    "note": 18
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/BiocParallel",
  "_commit": {
    "id": "a331dfd2695daec754304505bdbd7358eef009fa",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777379824
  },
  "_maintainer": {
    "name": "Jiefei Wang",
    "email": "jiefei0804@gmail.com",
    "login": "teslawiddy",
    "description": "Proficient in programming languages such as Python and R, as well as various data analysis tools and platforms such as SQL, Tableau, and AWS.",
    "uuid": 130170664
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "methods",
      "role": "Depends"
    },
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "BH",
      "version": ">= 1.87.0",
      "role": "LinkingTo"
    },
    {
      "package": "cpp11",
      "role": "LinkingTo"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "futile.logger",
      "role": "Imports"
    },
    {
      "package": "parallel",
      "role": "Imports"
    },
    {
      "package": "snow",
      "role": "Imports"
    },
    {
      "package": "codetools",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Suggests"
    },
    {
      "package": "tools",
      "role": "Suggests"
    },
    {
      "package": "foreach",
      "role": "Suggests"
    },
    {
      "package": "BBmisc",
      "role": "Suggests"
    },
    {
      "package": "doParallel",
      "role": "Suggests"
    },
    {
      "package": "GenomicRanges",
      "role": "Suggests"
    },
    {
      "package": "RNAseqData.HNRNPC.bam.chr14",
      "role": "Suggests"
    },
    {
      "package": "TxDb.Hsapiens.UCSC.hg19.knownGene",
      "role": "Suggests"
    },
    {
      "package": "VariantAnnotation",
      "role": "Suggests"
    },
    {
      "package": "Rsamtools",
      "role": "Suggests"
    },
    {
      "package": "GenomicAlignments",
      "role": "Suggests"
    },
    {
      "package": "ShortRead",
      "role": "Suggests"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "batchtools",
      "role": "Suggests"
    },
    {
      "package": "data.table",
      "role": "Suggests"
    },
    {
      "package": "Rmpi",
      "role": "Enhances"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 1174,
  "_updates": [
    {
      "week": "2025-22",
      "n": 2
    },
    {
      "week": "2025-24",
      "n": 1
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.47.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.46.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "infrastructure",
    "bioconductor-package",
    "core-package",
    "u24ca289073",
    "cpp"
  ],
  "_stars": 69,
  "_contributors": [
    {
      "user": "mtmorgan",
      "count": 309,
      "uuid": 118552
    },
    {
      "user": "nturaga",
      "count": 80,
      "uuid": 2746443
    },
    {
      "user": "jiefei-wang",
      "count": 52,
      "uuid": 13570205
    },
    {
      "user": "dtenenba",
      "count": 18,
      "uuid": 2286826
    },
    {
      "user": "jwokaty",
      "count": 18,
      "uuid": 1744257
    },
    {
      "user": "phyleria",
      "count": 11,
      "uuid": 47274629
    },
    {
      "user": "hpages",
      "count": 7,
      "uuid": 8810451
    },
    {
      "user": "link-ny",
      "count": 5,
      "uuid": 4392950
    },
    {
      "user": "dvantwisk",
      "count": 4,
      "uuid": 10927671
    },
    {
      "user": "zeehio",
      "count": 4,
      "uuid": 75441
    },
    {
      "user": "petehaitch",
      "count": 3,
      "uuid": 1049741
    },
    {
      "user": "ginggs",
      "count": 2,
      "uuid": 1970404
    },
    {
      "user": "henrikbengtsson",
      "count": 2,
      "uuid": 1616850
    },
    {
      "user": "mcarlsn",
      "count": 2,
      "uuid": 105299892
    },
    {
      "user": "grimbough",
      "count": 2,
      "uuid": 971237
    },
    {
      "user": "vobencha",
      "count": 2,
      "uuid": 2466173
    },
    {
      "user": "csoneson",
      "count": 1,
      "uuid": 5628952
    },
    {
      "user": "darios",
      "count": 1,
      "uuid": 631218
    },
    {
      "user": "ltla",
      "count": 1,
      "uuid": 8166669
    },
    {
      "user": "spotrh",
      "count": 1,
      "uuid": 1318972
    },
    {
      "user": "vjcitn",
      "count": 1,
      "uuid": 4624066
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 120426,
    "source": "https://www.bioconductor.org/packages/stats/bioc/BiocParallel"
  },
  "_mentions": 30,
  "_devurl": "https://github.com/bioconductor/biocparallel",
  "_searchresults": 10592,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/BiocParallel.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/bioconductor/biocparallel",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    ".BiocParallelParam_prototype",
    ".bpiterate_impl",
    ".bplapply_impl",
    ".bpstart_impl",
    ".bpstop_impl",
    ".bpworker_impl",
    ".close",
    ".error_worker_comm",
    ".manager",
    ".manager_capacity",
    ".manager_cleanup",
    ".manager_flush",
    ".manager_recv",
    ".manager_recv_all",
    ".manager_send",
    ".manager_send_all",
    ".prettyPath",
    ".prototype_update",
    ".recv",
    ".recv_all",
    ".recv_any",
    ".registerOption",
    ".send",
    ".send_all",
    ".send_to",
    ".task_const",
    ".task_dynamic",
    ".task_remake",
    "batchtoolsCluster",
    "BatchtoolsParam",
    "batchtoolsRegistryargs",
    "batchtoolsTemplate",
    "batchtoolsWorkers",
    "bpaggregate",
    "bpbackend",
    "bpbackend<-",
    "bperrorTypes",
    "bpexportglobals",
    "bpexportglobals<-",
    "bpexportvariables",
    "bpexportvariables<-",
    "bpfallback",
    "bpfallback<-",
    "bpforceGC",
    "bpforceGC<-",
    "bpisup",
    "bpiterate",
    "bpiterateAlong",
    "bpjobname",
    "bpjobname<-",
    "bplapply",
    "bplog",
    "bplog<-",
    "bplogdir",
    "bplogdir<-",
    "bploop",
    "bpmapply",
    "bpnworkers",
    "bpok",
    "bpoptions",
    "bpparam",
    "bpprogressbar",
    "bpprogressbar<-",
    "bpresult",
    "bpresultdir",
    "bpresultdir<-",
    "bpRNGseed",
    "bpRNGseed<-",
    "bprunMPIworker",
    "bpschedule",
    "bpstart",
    "bpstop",
    "bpstopOnError",
    "bpstopOnError<-",
    "bptasks",
    "bptasks<-",
    "bpthreshold",
    "bpthreshold<-",
    "bptimeout",
    "bptimeout<-",
    "bptry",
    "bpvalidate",
    "bpvec",
    "bpvectorize",
    "bpworkers",
    "bpworkers<-",
    "DoparParam",
    "ipcid",
    "ipclock",
    "ipclocked",
    "ipcremove",
    "ipcreset",
    "ipctrylock",
    "ipcunlock",
    "ipcvalue",
    "ipcyield",
    "MulticoreParam",
    "multicoreWorkers",
    "register",
    "registered",
    "SerialParam",
    "show",
    "SnowParam",
    "snowWorkers"
  ],
  "_help": [
    {
      "page": "BiocParallel-package",
      "title": "Bioconductor facilities for parallel evaluation",
      "topics": [
        "BiocParallel-package",
        "BiocParallel"
      ]
    },
    {
      "page": "BatchtoolsParam-class",
      "title": "Enable parallelization on batch systems",
      "topics": [
        "batchtoolsCluster",
        "BatchtoolsParam",
        "BatchtoolsParam-class",
        "batchtoolsRegistryargs",
        "batchtoolsTemplate",
        "batchtoolsWorkers",
        "bpbackend,BatchtoolsParam-method",
        "bpisup,BatchtoolsParam-method",
        "bplapply,ANY,BatchtoolsParam-method",
        "bplogdir,BatchtoolsParam-method",
        "bplogdir<-,BatchtoolsParam,character-method",
        "bpRNGseed,BatchtoolsParam-method",
        "bpRNGseed<-,BatchtoolsParam,numeric-method",
        "bpschedule,BatchtoolsParam-method",
        "bpstart,BatchtoolsParam-method",
        "bpstop,BatchtoolsParam-method",
        "bpworkers,BatchtoolsParam-method",
        "show,BatchtoolsParam-method"
      ]
    },
    {
      "page": "BiocParallel-defunct",
      "title": "Defunct Objects in Package 'BiocParallel'",
      "topics": [
        "BatchJobsParam",
        "bprunMPIslave"
      ]
    },
    {
      "page": "BiocParallel-deprecated",
      "title": "Deprecated Functions in Package 'BiocParallel'",
      "topics": [
        "BiocParallel-deprecated"
      ]
    },
    {
      "page": "BiocParallelParam-class",
      "title": "BiocParallelParam objects",
      "topics": [
        "BiocParallelParam",
        "BiocParallelParam-class",
        "bpbackend",
        "bpbackend,missing-method",
        "bpbackend<-",
        "bpbackend<-,missing,ANY-method",
        "bpexportglobals",
        "bpexportglobals,BiocParallelParam-method",
        "bpexportglobals<-",
        "bpexportglobals<-,BiocParallelParam,logical-method",
        "bpexportvariables",
        "bpexportvariables,BiocParallelParam-method",
        "bpexportvariables<-",
        "bpexportvariables<-,BiocParallelParam,logical-method",
        "bpfallback",
        "bpfallback,BiocParallelParam-method",
        "bpfallback<-",
        "bpfallback<-,BiocParallelParam,logical-method",
        "bpforceGC",
        "bpforceGC,BiocParallelParam-method",
        "bpforceGC<-",
        "bpforceGC<-,BiocParallelParam,numeric-method",
        "bpisup",
        "bpisup,ANY-method",
        "bpisup,missing-method",
        "bpjobname",
        "bpjobname,BiocParallelParam-method",
        "bpjobname<-",
        "bpjobname<-,BiocParallelParam,character-method",
        "bplog",
        "bplog,BiocParallelParam-method",
        "bplog<-",
        "bplogdir",
        "bplogdir,BiocParallelParam-method",
        "bplogdir<-",
        "bplogdir<-,BiocParallelParam,character-method",
        "bpnworkers",
        "bpprogressbar",
        "bpprogressbar,BiocParallelParam-method",
        "bpprogressbar<-",
        "bpprogressbar<-,BiocParallelParam,logical-method",
        "bpresultdir",
        "bpresultdir,BiocParallelParam-method",
        "bpresultdir<-",
        "bpresultdir<-,BiocParallelParam,character-method",
        "bpRNGseed",
        "bpRNGseed,BiocParallelParam-method",
        "bpRNGseed<-",
        "bpRNGseed<-,BiocParallelParam,NULL-method",
        "bpRNGseed<-,BiocParallelParam,numeric-method",
        "bpstart",
        "bpstart,ANY-method",
        "bpstart,BiocParallelParam-method",
        "bpstart,missing-method",
        "bpstop",
        "bpstop,ANY-method",
        "bpstop,BiocParallelParam-method",
        "bpstop,missing-method",
        "bpstopOnError",
        "bpstopOnError,BiocParallelParam-method",
        "bpstopOnError<-",
        "bpstopOnError<-,BiocParallelParam,logical-method",
        "bpstopOnError<-,DoparParam,logical-method",
        "bptasks",
        "bptasks,BiocParallelParam-method",
        "bptasks<-",
        "bptasks<-,BiocParallelParam,ANY-method",
        "bptasks<-,BiocParallelParam-method",
        "bpthreshold",
        "bpthreshold,BiocParallelParam-method",
        "bpthreshold<-",
        "bptimeout",
        "bptimeout,BiocParallelParam-method",
        "bptimeout<-",
        "bptimeout<-,BiocParallelParam,numeric-method",
        "bpworkers",
        "bpworkers,BiocParallelParam-method",
        "bpworkers,missing-method",
        "bpworkers<-",
        "print.remote_error",
        "show,BiocParallel-method"
      ]
    },
    {
      "page": "bpaggregate",
      "title": "Apply a function on subsets of data frames",
      "topics": [
        "bpaggregate",
        "bpaggregate,ANY,missing-method",
        "bpaggregate,data.frame,BiocParallelParam-method",
        "bpaggregate,formula,BiocParallelParam-method",
        "bpaggregate,matrix,BiocParallelParam-method"
      ]
    },
    {
      "page": "bpiterate",
      "title": "Parallel iteration over an indeterminate number of data chunks",
      "topics": [
        "bpiterate",
        "bpiterate,ANY,ANY,BatchtoolsParam-method",
        "bpiterate,ANY,ANY,BiocParallelParam-method",
        "bpiterate,ANY,ANY,DoparParam-method",
        "bpiterate,ANY,ANY,missing-method",
        "bpiterate,ANY,ANY,SerialParam-method",
        "bpiterate,ANY,ANY,SnowParam-method",
        "bpiterateAlong"
      ]
    },
    {
      "page": "bplapply",
      "title": "Parallel lapply-like functionality",
      "topics": [
        "bplapply",
        "bplapply,ANY,BiocParallelParam-method",
        "bplapply,ANY,DoparParam-method",
        "bplapply,ANY,list-method",
        "bplapply,ANY,missing-method",
        "bplapply,ANY,SerialParam-method",
        "bplapply,ANY,SnowParam-method"
      ]
    },
    {
      "page": "bploop",
      "title": "Internal Functions for SNOW-style Parallel Evaluation",
      "topics": [
        "bploop",
        "bploop.iterate",
        "bploop.lapply",
        "bprunMPIworker"
      ]
    },
    {
      "page": "bpmapply",
      "title": "Parallel mapply-like functionality",
      "topics": [
        "bpmapply",
        "bpmapply,ANY,BiocParallelParam-method",
        "bpmapply,ANY,list-method",
        "bpmapply,ANY,missing-method"
      ]
    },
    {
      "page": "bpok",
      "title": "Resume computation with partial results",
      "topics": [
        "bperrorTypes",
        "bpok",
        "bpresult"
      ]
    },
    {
      "page": "bpoptions",
      "title": "Additional options to parallel evaluation",
      "topics": [
        "bpoptions"
      ]
    },
    {
      "page": "bpschedule",
      "title": "Schedule back-end Params",
      "topics": [
        "bpschedule",
        "bpschedule,ANY-method",
        "bpschedule,missing-method"
      ]
    },
    {
      "page": "bptry",
      "title": "Try expression evaluation, recovering from bperror signals",
      "topics": [
        "bptry"
      ]
    },
    {
      "page": "bpvalidate",
      "title": "Tools for developing functions for parallel execution in distributed memory",
      "topics": [
        "bpvalidate",
        "BPValidate-class",
        "show,BPValidate-method"
      ]
    },
    {
      "page": "bpvec",
      "title": "Parallel, vectorized evaluation",
      "topics": [
        "bpvec",
        "bpvec,ANY,BiocParallelParam-method",
        "bpvec,ANY,list-method",
        "bpvec,ANY,missing-method"
      ]
    },
    {
      "page": "bpvectorize",
      "title": "Transform vectorized functions into parallelized, vectorized function",
      "topics": [
        "bpvectorize",
        "bpvectorize,ANY,ANY-method",
        "bpvectorize,ANY,missing-method"
      ]
    },
    {
      "page": "DeveloperInterface",
      "title": "Developer interface",
      "topics": [
        ".BiocParallelParam_prototype",
        ".bpiterate_impl",
        ".bplapply_impl",
        ".bpstart_impl",
        ".bpstop_impl",
        ".bpworker_impl",
        ".close",
        ".close,ANY-method",
        ".manager",
        ".manager,ANY-method",
        ".manager,DoparParam-method",
        ".manager,SnowParam-method",
        ".manager,TransientMulticoreParam-method",
        ".manager_capacity",
        ".manager_capacity,ANY-method",
        ".manager_capacity,DoparParamManager-method",
        ".manager_capacity,TaskManager-method",
        ".manager_cleanup",
        ".manager_cleanup,ANY-method",
        ".manager_cleanup,SOCKmanager-method",
        ".manager_cleanup,TaskManager-method",
        ".manager_flush",
        ".manager_flush,ANY-method",
        ".manager_flush,TaskManager-method",
        ".manager_recv",
        ".manager_recv,ANY-method",
        ".manager_recv,DoparParamManager-method",
        ".manager_recv,TaskManager-method",
        ".manager_recv_all",
        ".manager_recv_all,ANY-method",
        ".manager_recv_all,DoparParamManager-method",
        ".manager_recv_all,TaskManager-method",
        ".manager_send",
        ".manager_send,ANY-method",
        ".manager_send,DoparParamManager-method",
        ".manager_send,SOCKmanager-method",
        ".manager_send,TaskManager-method",
        ".manager_send_all",
        ".manager_send_all,ANY-method",
        ".manager_send_all,DoparParamManager-method",
        ".manager_send_all,TaskManager-method",
        ".prototype_update",
        ".recv",
        ".recv,ANY-method",
        ".recv,SOCKnode-method",
        ".recv_all",
        ".recv_all,ANY-method",
        ".recv_any",
        ".recv_any,ANY-method",
        ".recv_any,SerialBackend-method",
        ".registerOption",
        ".send",
        ".send,ANY-method",
        ".send_all",
        ".send_all,ANY-method",
        ".send_to",
        ".send_to,ANY-method",
        ".send_to,SerialBackend-method",
        ".task_const",
        ".task_dynamic",
        ".task_remake"
      ]
    },
    {
      "page": "DoparParam-class",
      "title": "Enable parallel evaluation using registered dopar backend",
      "topics": [
        "bpbackend,DoparParam-method",
        "bpbackend<-,DoparParam,SOCKcluster-method",
        "bpisup,DoparParam-method",
        "bpstart,DoparParam-method",
        "bpstop,DoparParam-method",
        "bpworkers,DoparParam-method",
        "coerce,SOCKcluster,DoparParam-method",
        "DoparParam",
        "DoparParam-class",
        "show,DoparParam-method"
      ]
    },
    {
      "page": "ipcmutex",
      "title": "Inter-process locks and counters",
      "topics": [
        "ipcid",
        "ipclock",
        "ipclocked",
        "ipcremove",
        "ipcreset",
        "ipctrylock",
        "ipcunlock",
        "ipcvalue",
        "ipcyield"
      ]
    },
    {
      "page": "MulticoreParam-class",
      "title": "Enable multi-core parallel evaluation",
      "topics": [
        ".close,TransientMulticoreParam-method",
        ".recv,TransientMulticoreParam-method",
        ".recv_all,TransientMulticoreParam-method",
        ".recv_any,TransientMulticoreParam-method",
        ".send,TransientMulticoreParam-method",
        ".send_to,TransientMulticoreParam-method",
        "bpbackend,TransientMulticoreParam-method",
        "bpisup,MulticoreParam-method",
        "bpschedule,MulticoreParam-method",
        "bpstart,TransientMulticoreParam-method",
        "bpstop,TransientMulticoreParam-method",
        "bpworkers<-,MulticoreParam,numeric-method",
        "length,TransientMulticoreParam-method",
        "MulticoreParam",
        "MulticoreParam-class",
        "multicoreWorkers",
        "show,MulticoreParam-method"
      ]
    },
    {
      "page": "register",
      "title": "Maintain a global registry of available back-end Params",
      "topics": [
        "bpparam",
        "register",
        "registered"
      ]
    },
    {
      "page": "SerialParam-class",
      "title": "Enable serial evaluation",
      "topics": [
        "bpbackend,SerialParam-method",
        "bpisup,SerialParam-method",
        "bplog,SerialParam-method",
        "bplog<-,SerialParam,logical-method",
        "bplogdir,SerialParam-method",
        "bplogdir<-,SerialParam,character-method",
        "bpstart,SerialParam-method",
        "bpstop,SerialParam-method",
        "bpthreshold<-,SerialParam,character-method",
        "bpworkers,SerialParam-method",
        "length,SerialBackend-method",
        "SerialParam",
        "SerialParam-class"
      ]
    },
    {
      "page": "SnowParam-class",
      "title": "Enable simple network of workstations (SNOW)-style parallel evaluation",
      "topics": [
        "bpbackend,SnowParam-method",
        "bpbackend<-,SnowParam,cluster-method",
        "bpisup,SnowParam-method",
        "bplog,SnowParam-method",
        "bplog<-,SnowParam,logical-method",
        "bpstart,SnowParam-method",
        "bpstop,SnowParam-method",
        "bpthreshold,SnowParam-method",
        "bpthreshold<-,SnowParam,character-method",
        "bpworkers,SnowParam-method",
        "bpworkers<-,SnowParam,character-method",
        "bpworkers<-,SnowParam,numeric-method",
        "coerce,SOCKcluster,SnowParam-method",
        "coerce,spawnedMPIcluster,SnowParam-method",
        "show,SnowParam-method",
        "SnowParam",
        "SnowParam-class",
        "snowWorkers"
      ]
    },
    {
      "page": "worker-number",
      "title": "Environment control of worker number",
      "topics": [
        "BIOCPARALLEL_WORKER_MAX",
        "BIOCPARALLEL_WORKER_NUMBER",
        "R_PARALLELLY_AVAILABLECORES_FALLBACK"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/BiocParallel/raw/RELEASE_3_23/README.md",
  "_rundeps": [
    "BH",
    "codetools",
    "cpp11",
    "formatR",
    "futile.logger",
    "futile.options",
    "lambda.r",
    "snow"
  ],
  "_sysdeps": [
    {
      "shlib": "libstdc++",
      "package": "libstdc++6",
      "source": "gcc",
      "version": "14.2.0-4ubuntu2~24.04.1",
      "name": "c++",
      "homepage": "http://gcc.gnu.org/",
      "description": "GNU Standard C++ Library v3"
    }
  ],
  "_vignettes": [
    {
      "source": "Introduction_To_BiocParallel.Rmd",
      "filename": "Introduction_To_BiocParallel.html",
      "title": "Introduction to BiocParallel ",
      "author": "Valerie Obenchain, Vincent Carey, Michael Lawrence, Phylis Atieno, Martin Morgan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Quick start",
        "The BiocParallel Interface",
        "Classes",
        "BiocParallelParam",
        "register()ing BiocParallelParam instances",
        "Functions",
        "Parallel looping, vectorized and aggregate operations",
        "Parallel evaluation environment",
        "Error handling and logging",
        "Locks and counters",
        "Use cases",
        "Single machine",
        "Forked processes with MulticoreParam",
        "Clusters of independent processes with SnowParam",
        "Ad hoc cluster of multiple machines",
        "Ad hoc Sockets",
        "MPI",
        "Clusters with schedulers",
        "Cluster-centric",
        "R-centric",
        "Analyzing genomic data in Bioconductor",
        "For developers",
        "For server administrators",
        "sessionInfo"
      ],
      "created": "2022-10-24 16:38:14",
      "modified": "2023-08-16 20:04:25",
      "commits": 4
    },
    {
      "source": "BiocParallel_BatchtoolsParam.Rmd",
      "filename": "BiocParallel_BatchtoolsParam.html",
      "title": "Introduction to BatchtoolsParam",
      "author": "Nitesh Turaga, Martin Morgan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Quick start",
        "BatchtoolsParam interface",
        "Defining templates",
        "Use cases",
        "Session info"
      ],
      "created": "2025-05-28 18:00:02",
      "modified": "2025-05-28 18:00:02",
      "commits": 1
    },
    {
      "source": "Errors_Logs_And_Debugging.Rmd",
      "filename": "Errors_Logs_And_Debugging.html",
      "title": "Errors, Logs and Debugging in BiocParallel",
      "author": "Valerie Obenchain, Martin Morgan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Error Handling",
        "Messages and warnings",
        "Catching errors",
        "Identify failures with bpok()",
        "Rerun failed tasks with BPREDO",
        "Logging",
        "Parameters",
        "Setting a threshold",
        "Log files",
        "Worker timeout",
        "Debugging",
        "Accessing the traceback",
        "Adding debug messages",
        "Local debugging with SerialParam",
        "Session info"
      ],
      "created": "2025-05-28 18:00:02",
      "modified": "2025-05-28 18:00:02",
      "commits": 1
    },
    {
      "source": "Random_Numbers.Rmd",
      "filename": "Random_Numbers.html",
      "title": "Random Numbers in BiocParallel",
      "author": "Martin Morgan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Scope",
        "Essentials",
        "Use of bplapply() and RNGseed=",
        "Use with bpiterate()",
        "Use with bptry()",
        "Relationship between RNGseed= and set.seed()",
        "bpstart() and random number streams",
        "Relationship between bplapply() and lapply()",
        "Implementation notes",
        "sessionInfo()"
      ],
      "created": "2022-08-01 18:14:02",
      "modified": "2022-08-01 18:14:02",
      "commits": 1
    }
  ],
  "_score": 17.69545665843976,
  "_indexed": false,
  "_nocasepkg": "biocparallel",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/BiocParallel",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.46.0",
      "date": "2026-05-29T06:24:56.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "b680cf17fe73b66fb27ca271dec84522a4f429ae3ab8eefb97f92e98b44052af",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.46.0",
      "date": "2026-05-29T06:25:50.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "4de3a4f747cf0799c42ec0cd563bff23f477da6c7d7d782821aa2050a604a160",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.46.0",
      "date": "2026-05-29T06:25:12.000Z",
      "distro": "noble",
      "arch": "aarch64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "5edf3275726767fa422692cc988247889f76dbe8c8a2ab197897ec313efb0af7",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.46.0",
      "date": "2026-05-29T06:26:20.000Z",
      "distro": "noble",
      "arch": "x86_64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "059b21d62dc4567d1235717a301d03aafc8a2c1765be8c344071c91344745cd1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.46.0",
      "date": "2026-05-30T05:43:13.000Z",
      "arch": "aarch64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "ff474688b93b6ab786f9cd3c72ba6117a35c6b7389d45e52ee26638e1711429b",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.46.0",
      "date": "2026-05-29T06:59:28.000Z",
      "arch": "x86_64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "cbb67a4a341554fa72cb73312b63f6573d0eed1b1bcb42084f4bfff8975e5bb1",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.46.0",
      "date": "2026-05-30T05:42:10.000Z",
      "arch": "aarch64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "0fb111c16f24ce5691190d135e3b5e162234445e7d6319623b3b667669da4c3a",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.46.0",
      "date": "2026-05-29T06:59:54.000Z",
      "arch": "x86_64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "27e380abe0964bd559f7298886579d2170a42e006118914a01b36d93f11cbccc",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.46.0",
      "date": "2026-05-29T06:25:13.000Z",
      "arch": "emscripten",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "a417ebffadc1a47bc2674bca1d7a5078df208e362aef70af39975d2229c45751",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-05-29T06:24:23.000Z",
      "arch": "x86_64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "4f81c66850f3729f5c08ceee4e62d3618a8aa693b80d3ac85bbe8c33972a3e0e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-05-29T06:24:32.000Z",
      "arch": "x86_64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "8fd4e11b35fc4f82d62114669427d14f3f52613a2cebe69c04d60ea950ca15c5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-05-29T06:24:58.000Z",
      "arch": "x86_64",
      "commit": "a331dfd2695daec754304505bdbd7358eef009fa",
      "fileid": "896399410659f1b4a34655fbad6ab389ea9e1baf404a32550ae01fb50323028c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26621509710"
    }
  ]
}