{ "_id": "6a19459bacfb0bcc41dd8cb5", "Package": "CNORfuzzy", "Type": "Package", "Title": "Addon to CellNOptR: Fuzzy Logic", "Version": "1.54.0", "Date": "2013-8-28", "Author": "M. Morris, T. Cokelaer", "Maintainer": "T. Cokelaer ", "Description": "This package is an extension to CellNOptR. It contains\nadditional functionality needed to simulate and train a prior\nknowledge network to experimental data using constrained fuzzy\nlogic (cFL, rather than Boolean logic as is the case in\nCellNOptR). Additionally, this package will contain functions\nto use for the compilation of multiple optimization results\n(either Boolean or cFL).", "License": "GPL-2", "LazyLoad": "yes", "biocViews": "Network", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:36:47 UTC", "RemoteUrl": "https://github.com/bioc/CNORfuzzy", "RemoteRef": "RELEASE_3_23", "RemoteSha": "e6944673b640cbf1cf80cc0a52464d6adb792190", "NeedsCompilation": "yes", "Packaged": { "Date": "2026-05-29 06:50:42 UTC", "User": "root" }, "MD5sum": "3b56b22892aff588c87f3ec20c1240d3", "_user": "bioc-release", "_type": "src", "_file": "CNORfuzzy_1.54.0.tar.gz", "_fileid": "b1ed7fa5ff6260dcca906f573e003feeb24ab6f84014987e99a533bb67a08582", "_filesize": 1076680, "_sha256": "b1ed7fa5ff6260dcca906f573e003feeb24ab6f84014987e99a533bb67a08582", "_created": "2026-05-29T06:50:42.000Z", "_published": "2026-05-29T07:51:55.758Z", "_distro": "noble", "_jobs": [ { "job": 78452425650, "time": 155, "config": "bioc-checks", "r": "4.6.0", "check": "FAILURE", "artifact": "" }, { "job": 78452425676, "time": 189, "config": "linux-devel-arm64", "r": "4.7.0", "check": "NOTE", "artifact": "7284861392" }, { "job": 78452425655, "time": 214, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7284867153" }, { "job": 78452425656, "time": 217, "config": "linux-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7284868067" }, { "job": 78452425674, "time": 270, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7284879710" }, { "job": 78452425677, "time": 95, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7285782641" }, { "job": 78452425667, "time": 291, "config": "macos-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "7285759313" }, { "job": 78452425679, "time": 132, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7285793207" }, { "job": 78452425669, "time": 320, "config": "macos-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7285767497" }, { "job": 78451974648, "time": 224, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7284817107" }, { "job": 78452425646, "time": 132, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7284847959" }, { "job": 78452425665, "time": 133, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7284848436" }, { "job": 78452425660, "time": 138, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7284849409" }, { "job": 78452425668, "time": 122, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7284845800" } ], "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/CNORfuzzy", "_commit": { "id": "e6944673b640cbf1cf80cc0a52464d6adb792190", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379807 }, "_maintainer": { "name": "T. Cokelaer", "email": "cokelaer@ebi.ac.uk" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.15.0", "role": "Depends" }, { "package": "CellNOptR", "version": ">= 1.4.0", "role": "Depends" }, { "package": "nloptr", "version": ">= 0.8.5", "role": "Depends" }, { "package": "xtable", "role": "Suggests" }, { "package": "Rgraphviz", "role": "Suggests" }, { "package": "RUnit", "role": "Suggests" }, { "package": "BiocGenerics", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.55.0", "bioc": "3.24" }, { "branch": "release", "version": "1.54.0", "bioc": "3.23" } ], "_topics": [ "network" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 396, "source": "https://www.bioconductor.org/packages/stats/bioc/CNORfuzzy" }, "_mentions": 2, "_searchresults": 7, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/CNORfuzzy.html", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "CNORwrapFuzzy", "compileMultiRes", "computeScoreFuzzy", "defaultParametersFuzzy", "gaDiscreteT1", "getRefinedModel", "interpretDiscreteGA", "plotMeanFuzzyFit", "prep4simFuzzy", "reduceFuzzy", "simFuzzyT1", "writeFuzzyNetwork" ], "_help": [ { "page": "CNORfuzzy-package", "title": "R version of CNOFuzzy, a Constrained Fuzzy Logic Network Optimisation", "topics": [ "CNORfuzzy-package", "CNORfuzzy" ] }, { "page": "CNORwrapFuzzy", "title": "CNORfuzzy analysis wrapper", "topics": [ "CNORwrapFuzzy" ] }, { "page": "compileMultiRes", "title": "Compiles results from multiple runs and produces graph for choosing Post Refinement Threshold", "topics": [ "compileMultiRes" ] }, { "page": "computeScoreFuzzy", "title": "Compute Score of a model compared to the data for a given intString.", "topics": [ "computeScoreFuzzy" ] }, { "page": "defaultParametersFuzzy", "title": "Create a list of default parameters", "topics": [ "defaultParametersFuzzy" ] }, { "page": "gaDiscreteT1", "title": "Genetic algorithm used to optimise a cFL model", "topics": [ "gaDiscreteT1" ] }, { "page": "getRefinedModel", "title": "Refinement of Parameters of cFL model", "topics": [ "getRefinedModel" ] }, { "page": "interpretDiscreteGA", "title": "Interpreter of output of discrete genetic algorithm", "topics": [ "interpretDiscreteGA" ] }, { "page": "plotMeanFuzzyFit", "title": "Simulates models returned from multiple cFL runs and plots mean fit to data", "topics": [ "plotMeanFuzzyFit" ] }, { "page": "prep4simFuzzy", "title": "Prepare a model for simulation", "topics": [ "prep4simFuzzy" ] }, { "page": "reduceFuzzy", "title": "Remove unnecessary interactions from cFL model", "topics": [ "reduceFuzzy" ] }, { "page": "simFuzzyT1", "title": "Simulation of a cFL model", "topics": [ "simFuzzyT1" ] }, { "page": "writeFuzzyNetwork", "title": "Despict the network results of training a cFL model to data in multiple runs.", "topics": [ "writeFuzzyNetwork" ] } ], "_rundeps": [ "base64enc", "BH", "BiocGenerics", "bitops", "bslib", "cachem", "CellNOptR", "cli", "cpp11", "digest", "evaluate", "farver", "fastmap", "fontawesome", "fs", "generics", "ggplot2", "glue", "graph", "gtable", "highr", "htmltools", "igraph", "isoband", "jquerylib", "jsonlite", "knitr", "labeling", "lattice", "lifecycle", "magrittr", "Matrix", "memoise", "mime", "nloptr", "pkgconfig", "R6", "rappdirs", "RBGL", "RColorBrewer", "RCurl", "Rgraphviz", "rlang", "rmarkdown", "S7", "sass", "scales", "stringi", "stringr", "tinytex", "vctrs", "viridisLite", "withr", "xfun", "XML", "yaml" ], "_vignettes": [ { "source": "CNORfuzzy-vignette.Rnw", "filename": "CNORfuzzy-vignette.pdf", "title": "Main vignette:Playing with networks using CNORfuzzyl", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:26:44", "modified": "2018-08-30 17:46:26", "commits": 2 } ], "_score": 3.6020599913279625, "_indexed": false, "_nocasepkg": "cnorfuzzy", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/CNORfuzzy", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.54.0", "date": "2026-05-29T06:53:32.000Z", "distro": "noble", "arch": "aarch64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "84211c97c0f668f220bcae4fa31da6acfa240e625d3829b5b43cff4793f45de8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.7.0", "os": "linux", "version": "1.54.0", "date": "2026-05-29T06:53:54.000Z", "distro": "noble", "arch": "x86_64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "c24f45b7d5d7b0e87784baf45b776e5a2b43f8c75ede35b2dcd5c1d175347557", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.6.0", "os": "linux", "version": "1.54.0", "date": "2026-05-29T06:53:35.000Z", "distro": "noble", "arch": "aarch64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "4b1558113509eb4fa7ec02b69b55c3d126afc0f839c01012bcb72ce900280cd0", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.6.0", "os": "linux", "version": "1.54.0", "date": "2026-05-29T06:54:40.000Z", "distro": "noble", "arch": "x86_64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "508023e681aa36c1e05f4d6a9bd864b0cf0d1f1585bdc3cc4dec8bbab6845e3d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.5.3", "os": "mac", "version": "1.54.0", "date": "2026-05-29T07:50:29.000Z", "arch": "aarch64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "8c164ed1aa82b7d7eea40d140c853a3d341ee28ec88cccbdf7981deadd0a2867", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.5.3", "os": "mac", "version": "1.54.0", "date": "2026-05-29T07:48:06.000Z", "arch": "x86_64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "09e4a6bc6ebd295618cd0044f5fe34fe65d9a25fd1d11f84884fe6761deca48a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.6.0", "os": "mac", "version": "1.54.0", "date": "2026-05-29T07:50:51.000Z", "arch": "aarch64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "532500e514408635e72682a657064c9ac0be1f7ae3b1966ec8a2a744e8753739", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.6.0", "os": "mac", "version": "1.54.0", "date": "2026-05-29T07:48:25.000Z", "arch": "x86_64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "4e62a2d11b3a86baccf30785f6ca66d0bd1578a57b3e782282c95f18577ccaf4", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.6.0", "os": "wasm", "version": "1.54.0", "date": "2026-05-29T06:53:15.000Z", "arch": "emscripten", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "ca89da8f8d656cd624b1b5af869124cceaba58c460b845b11ffad4a263921f1d", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.7.0", "os": "win", "version": "1.54.0", "date": "2026-05-29T06:52:17.000Z", "arch": "x86_64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "bddc493bbafccaa22a3fedd9e947bdf7509e17a0db059c699749e7c66ba48eb8", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.5.3", "os": "win", "version": "1.54.0", "date": "2026-05-29T06:52:27.000Z", "arch": "x86_64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "2b55b2d5f88619c6b9cc243a5a5316b13048f554013ecb3b27c28bfe8b67d0a2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" }, { "r": "4.6.0", "os": "win", "version": "1.54.0", "date": "2026-05-29T06:52:10.000Z", "arch": "x86_64", "commit": "e6944673b640cbf1cf80cc0a52464d6adb792190", "fileid": "ce1bdab1560f4078aef6d795d77c27d0beddecea934811915d76182608bac2a5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622651197" } ] }