{
  "_id": "6ae33dac327abcdf86866f84",
  "Package": "COSNet",
  "Type": "Package",
  "Title": "Cost Sensitive Network for node label prediction on graphs with\nhighly unbalanced labelings",
  "Version": "1.46.0",
  "Date": "2015-11-06",
  "Author": "Marco Frasca and Giorgio Valentini -- Universita' degli Studi\ndi Milano",
  "Maintainer": "Marco Frasca<frasca@di.unimi.it>",
  "Description": "Package that implements the COSNet classification\nalgorithm. The algorithm predicts node labels in partially\nlabeled graphs where few positives are available for the class\nbeing predicted.",
  "License": "GPL (>= 2)",
  "URL": "https://github.com/m1frasca/COSNet_GitHub",
  "LazyLoad": "yes",
  "biocViews": "GraphAndNetwork, Classification,Network, NeuralNetwork",
  "Repository": "Bioconductor 3.23",
  "Date/Publication": "2026-04-28 12:40:11 UTC",
  "RemoteUrl": "https://github.com/bioc/COSNet",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "80f490de3c89d342933c061b4fc763c86e980240",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-29 11:28:57 UTC",
    "User": "root"
  },
  "_user": "bioc-release",
  "_type": "src",
  "_file": "COSNet_1.46.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/dc0b5a8662a17d6b5305ee2a2ebb8f83aa3feb064e64c29bced476adecd87a13",
  "_filesize": 413322,
  "_sha256": "dc0b5a8662a17d6b5305ee2a2ebb8f83aa3feb064e64c29bced476adecd87a13",
  "_expires": "2027-02-06T12:35:54.000Z",
  "_created": "2026-10-29T11:28:57.000Z",
  "_published": "2026-10-29T12:35:56.393Z",
  "_upstream": "https://github.com/bioc/COSNet",
  "_status": "success",
  "_maintainer": {
    "name": "Marco Frasca",
    "email": "frasca@di.unimi.it",
    "login": "m1frasca",
    "description": "",
    "uuid": 13033634
  },
  "_jobs": [
    {
      "job": 123420026620,
      "time": 105,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "12894066254"
    },
    {
      "job": 123420026655,
      "time": 93,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "12892869769"
    },
    {
      "job": 123420026601,
      "time": 162,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "12892914795"
    },
    {
      "job": 123420026684,
      "time": 106,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12894430013"
    },
    {
      "job": 123420026755,
      "time": 212,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12893244044"
    },
    {
      "job": 123420026690,
      "time": 100,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "12897162735"
    },
    {
      "job": 123420026678,
      "time": 135,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "12896304758"
    },
    {
      "job": 123420026677,
      "time": 127,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12897527140"
    },
    {
      "job": 123420026580,
      "time": 226,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12897167314"
    },
    {
      "job": 123418268855,
      "time": 241,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12892439889"
    },
    {
      "job": 123420026628,
      "time": 78,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12893676806"
    },
    {
      "job": 123420026653,
      "time": 257,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "12894360726"
    },
    {
      "job": 123420026809,
      "time": 136,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "12893402691"
    },
    {
      "job": 123420026786,
      "time": 87,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "12893921553"
    },
    {
      "job": 123420026685,
      "time": 232,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12893443011"
    },
    {
      "job": 123420026749,
      "time": 102,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "WARNING",
      "artifact": "12893647504"
    }
  ],
  "_bioccheck": {
    "error": 2,
    "warning": 3,
    "note": 12
  },
  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372",
  "_commit": {
    "id": "80f490de3c89d342933c061b4fc763c86e980240",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
    "time": 1777380011
  },
  "_distro": "resolute",
  "_host": "GitHub-Actions",
  "_registered": true,
  "_dependencies": [
    {
      "package": "bionetdata",
      "role": "Suggests"
    },
    {
      "package": "PerfMeas",
      "role": "Suggests"
    },
    {
      "package": "RUnit",
      "role": "Suggests"
    },
    {
      "package": "BiocGenerics",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 1
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.47.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.46.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "graphandnetwork",
    "classification",
    "network",
    "neuralnetwork"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "m1frasca",
      "count": 25,
      "uuid": 13033634
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 481,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 489,
    "source": "https://www.bioconductor.org/packages/stats/bioc/COSNet"
  },
  "_mentions": 8,
  "_devurl": "https://github.com/m1frasca/cosnet_github",
  "_searchresults": 17,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/COSNet.html",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "COSNet",
    "cosnet.cross.validation",
    "find.division.not.strat",
    "find.division.strat",
    "generate_labels",
    "generate_points",
    "optimize_pos_above",
    "optimizep",
    "reg_data",
    "runSubnet"
  ],
  "_help": [
    {
      "page": "COSNet-package",
      "title": "R package for binary classification and node ranking on partially labeled graphs with unbalanced labels.",
      "topics": [
        "COSNet-package"
      ]
    },
    {
      "page": "COSNet",
      "title": "Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings",
      "topics": [
        "COSNet"
      ]
    },
    {
      "page": "cosnet.cross.validation",
      "title": "Cross validation procedure for the COSNet algorithm",
      "topics": [
        "cosnet.cross.validation"
      ]
    },
    {
      "page": "find.division.not.strat",
      "title": "Random partitioning of input data",
      "topics": [
        "find.division.not.strat"
      ]
    },
    {
      "page": "find.division.strat",
      "title": "Compute a stratified random partition of the input data",
      "topics": [
        "find.division.strat"
      ]
    },
    {
      "page": "generate_labels",
      "title": "Generate random labels",
      "topics": [
        "generate_labels"
      ]
    },
    {
      "page": "generate_points",
      "title": "Compute the points to be separated in Step 2 of COSNet algorithm (Frasca et al. 2013)",
      "topics": [
        "generate_points"
      ]
    },
    {
      "page": "optimize_pos_above",
      "title": "Alternative algortihm for optimizing parameters",
      "topics": [
        "optimize_pos_above"
      ]
    },
    {
      "page": "optimizep",
      "title": "Optimizing algorithm parameters",
      "topics": [
        "optimizep"
      ]
    },
    {
      "page": "reg_data",
      "title": "Function to compute the regularized version of COSNet (Frasca et al. 2013)",
      "topics": [
        "reg_data"
      ]
    },
    {
      "page": "runSubnet",
      "title": "Realizing the network dynamics.",
      "topics": [
        "runSubnet"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "COSNet_v.Rnw",
      "filename": "COSNet_v.pdf",
      "title": "An R Package for Predicting Binary Labels in Partially-Labeled Graphs",
      "engine": "utils::Sweave",
      "headings": [
        "Introduction",
        "COSNet",
        "An Example of the Usage of COSNet for the Functional Classification of Yeast Genes with the Functional Catalogue",
        "An Example of the Usage of COSNet for Inferring Gene Ontology Labels for Fly Genes",
        "Usage of COSNet for Predicting Therapeutical Categories of Drugs"
      ],
      "created": "2014-10-11 00:28:51",
      "modified": "2014-10-11 00:28:51",
      "commits": 1
    }
  ],
  "_score": 4.434568904034199,
  "_indexed": false,
  "_nocasepkg": "cosnet",
  "_universes": [
    "bioc-release"
  ],
  "_indexurl": "https://bioc.r-universe.dev/COSNet",
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.46.0",
      "date": "2026-10-29T11:30:38.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/1e20b0bbf559f6596e532e07b43cad920efd6e02a56d48c695a0d9343610e709",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.46.0",
      "date": "2026-10-29T11:31:44.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/c09255ce8135d514da3fff77fc57f1bd54ea4442c8c56b948394de3818a63ab9",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.46.0",
      "date": "2026-10-29T11:30:53.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/577f2f2797870d59f177789d32274011c850b5f95eab21af0d821261721d15e6",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.46.0",
      "date": "2026-10-29T11:32:30.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/5b6b8f7b12b34e7b741e3006dc1fd9a9bafdc6df39c170d7568a43c2470cb5a6",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.46.0",
      "date": "2026-10-29T12:33:25.000Z",
      "arch": "aarch64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/267219a57cc09c84e6997cdd0b820b0d09ea3a57ee7cf7780cbe9a16bd74bcb1",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.46.0",
      "date": "2026-10-29T12:27:13.000Z",
      "arch": "x86_64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/1f1ca1fd06f9242808ae1e1af1f0898212589106f5207e6a52339864e09f32ac",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.46.0",
      "date": "2026-10-29T12:34:26.000Z",
      "arch": "aarch64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/1dc87f6ab58d26a4d56bc57191866b62732222036726a2a57d8f365dfcc735b7",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.46.0",
      "date": "2026-10-29T12:34:44.000Z",
      "arch": "x86_64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/b6495c795acab773fb0fa43315e0e4538423bd72cd97d91a2d9a6628940fb145",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.46.0",
      "date": "2026-10-29T11:30:35.000Z",
      "arch": "emscripten",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/bd56f53abbe1b3134daf29c86916e15e24c31034c5006f9e90fd402542690d06",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-10-29T11:33:01.000Z",
      "arch": "aarch64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/05b9129e19d9bef3e45be3722c73f06d13a6fe36370ad22fe62232e546ef8014",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-10-29T11:30:24.000Z",
      "arch": "x86_64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/d04630dcda9dcdf8868e20393add2e7c0ff00181dfc62e4960f582f9f15b3fa5",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-10-29T11:30:14.000Z",
      "arch": "x86_64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/45ed0556bb1b1784c75156f5e6b825c099296076742c8d67f6fd763711825ed8",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-10-29T11:32:41.000Z",
      "arch": "aarch64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/bf6d2b5b9d2d131a9b6f970e4368fbc0edf579572741d68ba18b7ea4b748d782",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.46.0",
      "date": "2026-10-29T11:30:25.000Z",
      "arch": "x86_64",
      "commit": "80f490de3c89d342933c061b4fc763c86e980240",
      "fileid": "https://r2.ropensci.org/bc9263dd50420df6b9068e4f056a8efe5a16dc7a6841bb7282adf4080750ef55",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/40865208372"
    }
  ]
}