{
  "_id": "6a194597acfb0bcc41dd8c5b",
  "Package": "CTDquerier",
  "Title": "Package for CTDbase data query, visualization and downstream\nanalysis",
  "Version": "2.20.0",
  "Authors@R": "c( person(\"Carles\", \"Hernandez-Ferrer\", email = \"carles.hernandez@isglobal.org\", role = c(\"aut\")),\nperson(\"Juan R.\", \"Gonzalez\", email = \"juanr.gonzalez@isglobal.org\", role = \"aut\"),\nperson(\"Xavier\", \"Escribà-Montagut\", email = \"xavier.escriba@isglobal.org\", role = \"cre\"))",
  "Description": "Package to retrieve and visualize data from the\nComparative Toxicogenomics Database (http://ctdbase.org/). The\ndownloaded data is formated as DataFrames for further\ndownstream analyses.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "LazyData": "false",
  "VignetteBuilder": "rmarkdown",
  "RoxygenNote": "7.2.1",
  "biocViews": "Software, BiomedicalInformatics, Infrastructure, DataImport,\nDataRepresentation, GeneSetEnrichment, NetworkEnrichment,\nPathways, Network, GO, KEGG",
  "Config/pak/sysreqs": "libglpk-dev make libicu-dev libxml2-dev libssl-dev",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:55:13 UTC",
  "RemoteUrl": "https://github.com/bioc/CTDquerier",
  "RemoteRef": "RELEASE_3_23",
  "RemoteSha": "00c1869a012f153214a1d2c86309b79d6f74a73c",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-29 06:50:38 UTC",
    "User": "root"
  },
  "Author": "Carles Hernandez-Ferrer [aut],\nJuan R. Gonzalez [aut],\nXavier Escribà-Montagut [cre]",
  "Maintainer": "Xavier Escribà-Montagut <xavier.escriba@isglobal.org>",
  "MD5sum": "01d20627250415850ead48ccd22a98db",
  "_user": "bioc-release",
  "_type": "src",
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  "_created": "2026-05-29T06:50:38.000Z",
  "_published": "2026-05-29T07:51:51.243Z",
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    "note": 14
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  "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26622687428",
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n",
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  "_owner": "bioc",
  "_selfowned": false,
  "_usedby": 0,
  "_updates": [
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      "n": 2
    },
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  "_tags": [],
  "_bioc": [
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      "version": "2.21.0",
      "bioc": "3.24"
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    "software",
    "biomedicalinformatics",
    "infrastructure",
    "dataimport",
    "datarepresentation",
    "genesetenrichment",
    "networkenrichment",
    "pathways",
    "network",
    "go",
    "kegg"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
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    "source": "https://www.bioconductor.org/packages/stats/bioc/CTDquerier"
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/CTDquerier.html",
    "manual.pdf"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "download_ctd_chem",
    "download_ctd_dise",
    "download_ctd_genes",
    "enrich",
    "get_table",
    "get_terms",
    "leaf_plot",
    "load_ctd_chem",
    "load_ctd_dise",
    "load_ctd_gene",
    "plot",
    "query_ctd_chem",
    "query_ctd_dise",
    "query_ctd_gene"
  ],
  "_datasets": [
    {
      "name": "gala",
      "title": "'CTDdata' for ilustrative purpouses",
      "object": "gala",
      "file": "gala.rda",
      "class": [
        "CTDdata"
      ],
      "fields": [],
      "table": false,
      "tojson": false
    }
  ],
  "_help": [
    {
      "page": "CTDdata-class",
      "title": "Class CTDdata",
      "topics": [
        "CTDdata",
        "CTDdata-class",
        "enrich,CTDdata-method",
        "get_table,CTDdata-method",
        "get_terms,CTDdata-method",
        "plot,CTDdata,ANY-method"
      ]
    },
    {
      "page": "CTDquerier",
      "title": "Package for CTDbase data query, data visualization and data analysis.",
      "topics": [
        "CTDquerier"
      ]
    },
    {
      "page": "download_ctd_chem",
      "title": "Function to download checmicals available in CTDbase",
      "topics": [
        "download_ctd_chem"
      ]
    },
    {
      "page": "download_ctd_dise",
      "title": "Function to download diseases available in CTDbase",
      "topics": [
        "download_ctd_dise"
      ]
    },
    {
      "page": "download_ctd_genes",
      "title": "Function to download genes available in CTDbase",
      "topics": [
        "download_ctd_genes"
      ]
    },
    {
      "page": "enrich-methods",
      "title": "Method to perform enrichment analysis using two 'CTDdata' objects",
      "topics": [
        "enrich"
      ]
    },
    {
      "page": "gala",
      "title": "'CTDdata' for ilustrative purpouses",
      "topics": [
        "gala"
      ]
    },
    {
      "page": "get_table-methods",
      "title": "Method to obtain a specific inner table from a 'CTDdata' object.",
      "topics": [
        "get_table"
      ]
    },
    {
      "page": "get_terms-methods",
      "title": "Getter to obtain the terms used to perform a query into CTDbase",
      "topics": [
        "get_terms"
      ]
    },
    {
      "page": "leaf_plot",
      "title": "Function to create a leaf plot",
      "topics": [
        "leaf_plot"
      ]
    },
    {
      "page": "load_ctd_chem",
      "title": "Function to load the '.tsv.gz' file for chemicals",
      "topics": [
        "load_ctd_chem"
      ]
    },
    {
      "page": "load_ctd_dise",
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      "topics": [
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      ]
    },
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      "topics": [
        "load_ctd_gene"
      ]
    },
    {
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      "title": "Function to query CTDbase using chemical terminology ( Chemical Name )",
      "topics": [
        "query_ctd_chem"
      ]
    },
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      "title": "Function to query CTDbase using disease terminology",
      "topics": [
        "query_ctd_dise"
      ]
    },
    {
      "page": "query_ctd_gene",
      "title": "Function to query CTDbase using gene terminology ( Gene Symbol )",
      "topics": [
        "query_ctd_gene"
      ]
    }
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