{ "_id": "6a196ab2acfb0bcc41de98aa", "Package": "CoSIA", "Type": "Package", "Title": "An Investigation Across Different Species and Tissues", "Version": "1.12.0", "Authors@R": "c(person(given = \"Anisha\",\nfamily = \"Haldar\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-1395-9793\")),\nperson(given = c(\"Vishal\", \"H.\"),\nfamily = \"Oza\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0001-6990-0267\")),\nperson(given = c(\"Amanda\", \"D.\"),\nfamily = \"Clark\",\nrole = c(\"aut\"),\nemail = \"clarkaduab@gmail.com\",\ncomment = c(ORCID = \"0000-0002-1186-3114\")),\nperson(given = c(\"Anthony\", \"B.\"),\nfamily = \"Crumley\",\nrole = c(\"cre\", \"aut\"),\nemail = \"acrumley@uab.edu\",\ncomment = c(ORCID = \"0009-0004-7347-4722\")),\nperson(given = c(\"Nathaniel\", \"S.\"),\nfamily = \"DeVoss\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0003-0465-2770\")),\nperson(given = c(\"Brittany\", \"N.\"),\nfamily = \"Lasseigne\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-1642-8904\")))", "Description": "Cross-Species Investigation and Analysis (CoSIA) is a\npackage that provides researchers with an alternative\nmethodology for comparing across species and tissues using\nnormal wild-type RNA-Seq Gene Expression data from Bgee. Using\nRNA-Seq Gene Expression data, CoSIA provides multiple\nvisualization tools to explore the transcriptome diversity and\nvariation across genes, tissues, and species. CoSIA uses the\nCoefficient of Variation and Shannon Entropy and Specificity to\ncalculate transcriptome diversity and variation. CoSIA also\nprovides additional conversion tools and utilities to provide a\nstreamlined methodology for cross-species comparison.", "License": "MIT + file LICENSE", "Encoding": "UTF-8", "RoxygenNote": "7.3.3", "biocViews": "Software, BiologicalQuestion, GeneExpression,\nMultipleComparison, ThirdPartyClient, DataImport, GUI", "BugReports": "https://github.com/lasseignelab/CoSIA/issues", "URL": "https://www.lasseigne.org/", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake make libicu-dev libpng-dev libuv1-dev\nlibxml2-dev libssl-dev libx11-dev zlib1g-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 13:03:48 UTC", "RemoteUrl": "https://github.com/bioc/CoSIA", "RemoteRef": "RELEASE_3_23", "RemoteSha": "d92bcef43243d8c4ceaeda97745470cc9c733f55", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-29 08:17:53 UTC", "User": "root" }, "Author": "Anisha Haldar [aut] (ORCID: ),\nVishal H. Oza [aut] (ORCID: ),\nAmanda D. Clark [aut] (ORCID: ),\nAnthony B. Crumley [cre, aut] (ORCID:\n),\nNathaniel S. DeVoss [aut] (ORCID:\n),\nBrittany N. Lasseigne [aut] (ORCID:\n)", "Maintainer": "Anthony B. 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