{ "_id": "6aca1f46fe5cc25786e84ea3", "Package": "DAPARdata", "Type": "Package", "Title": "Data accompanying the DAPAR and Prostar packages", "Version": "1.42.0", "Date": "2023-01-14", "Authors@R": "c(\nperson(\"Florence\", \"Combes\", email = \"florence.combes@cea.fr\",\nrole = \"aut\"),\nperson(\"Samuel\", \"Wieczorek\", email = \"samuel.wieczorek@cea.fr\",\nrole = c(\"cre\", \"aut\"))\n)", "Author": "Samuel Wieczorek [cre,aut], Thomas Burger [aut], Enora Fremy\n[aut]", "Maintainer": "Samuel Wieczorek ", "Description": "Mass-spectrometry based UPS proteomics data sets from\nRamus C, Hovasse A, Marcellin M, Hesse AM, Mouton-Barbosa E,\nBouyssie D, Vaca S, Carapito C, Chaoui K, Bruley C, Garin J,\nCianferani S, Ferro M, Dorssaeler AV, Burlet-Schiltz O,\nSchaeffer C, Coute Y, Gonzalez de Peredo A. Spiked proteomic\nstandard dataset for testing label-free quantitative software\nand statistical methods. Data Brief. 2015 Dec 17;6:286-94 and\nGiai Gianetto, Q., Combes, F., Ramus, C., Bruley, C., Coute,\nY., Burger, T. (2016). Calibration plot for proteomics: A\ngraphical tool to visually check the assumptions underlying FDR\ncontrol in quantitative experiments. Proteomics, 16(1), 29-32.", "License": "GPL-2", "biocViews": "ExperimentData, MassSpectrometryData, Proteome", "NeedsCompilation": "no", "RoxygenNote": "7.2.3", "Packaged": { "Date": "2026-10-10 11:10:21 UTC", "User": "root" }, "Encoding": "UTF-8", "URL": "http://www.prostar-proteomics.org/", "BugReports": "https://github.com/edyp-lab/DAPARdata/issues", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libnetcdf-dev libssl-dev zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:29:33 UTC", "RemoteUrl": "https://github.com/bioc/DAPARdata", "RemoteRef": "RELEASE_3_23", "RemoteSha": "4632a7170bd39b046d26988985212aefe9c94bd1", "_user": "bioc-release", "_type": "src", "_file": "DAPARdata_1.42.0.tar.gz", "_fileid": "https://r2.ropensci.org/2982f47fc716447571773e3d30a5f2dca46b11e25a4ff94aae8f38a8523b95f3", "_filesize": 30387084, "_sha256": "2982f47fc716447571773e3d30a5f2dca46b11e25a4ff94aae8f38a8523b95f3", "_expires": "2027-01-18T11:19:31.000Z", "_created": "2026-10-10T11:10:21.000Z", "_published": "2026-10-10T11:19:34.484Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047207263", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 0, "warning": 1, "note": 3 }, "_upstream": "https://github.com/bioc/DAPARdata", "_commit": { "id": "4632a7170bd39b046d26988985212aefe9c94bd1", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379373 }, "_maintainer": { "name": "Samuel Wieczorek", "email": "samuel.wieczorek@cea.fr", "login": "samwieczorek", "description": "", "uuid": 2912670 }, "_distro": "resolute", "_jobs": [ { "job": 114200034459, "time": 185, "config": "bioc-checks", "r": "4.6.1", "check": "WARNING", "artifact": "11668192044" }, { "job": 114200034415, "time": 441, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11668716063" }, { "job": 114200034456, "time": 419, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11668327327" }, { "job": 114199080301, "time": 335, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11668945214" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.4.0", "role": "Depends" }, { "package": "MSnbase", "role": "Depends" }, { "package": "utils", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "DAPAR", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 2, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.43.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.42.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "massspectrometrydata", "proteome", "prostar1", "datapkg" ], "_stars": 0, "_contributors": [ { "user": "samwieczorek", "count": 91, "uuid": 2912670 }, { "user": "hpages", "count": 18, "uuid": 8810451 }, { "user": "jwokaty", "count": 4, "uuid": 1744257 }, { "user": "nturaga", "count": 4, "uuid": 2746443 }, { "user": "dtenenba", "count": 2, "uuid": 2286826 }, { "user": "lshep", "count": 1, "uuid": 18724380 }, { "user": "samuelwieczorek", "count": 1, "uuid": 71639216 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_devurl": "https://github.com/edyp-lab/dapardata", "_searchresults": 10, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/DAPARdata.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_cranurl": false, "_exports": [ "DAPARdata" ], "_datasets": [ { "name": "Exp1_R2_pept", "title": "Exp1_R2_pept dataset", "object": "Exp1_R2_pept", "file": "Exp1_R2_pept.RData", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Exp1_R2_prot", "title": "Exp1_R2_prot dataset", "object": "Exp1_R2_prot", "file": "Exp1_R2_prot.RData", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Exp1_R25_pept", "title": "Exp1_R25_pept dataset", "object": "Exp1_R25_pept", "file": "Exp1_R25_pept.RData", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Exp1_R25_prot", "title": "Exp1_R25_prot dataset", "object": "Exp1_R25_prot", "file": "Exp1_R25_prot.RData", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Exp2_R10_pept", "title": "Exp2_R10_pept dataset", "object": "Exp2_R10_pept", "file": "Exp2_R10_pept.RData", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Exp2_R10_prot", "title": "Exp2_R10_prot dataset", "object": "Exp2_R10_prot", "file": "Exp2_R10_prot.RData", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Exp2_R100_pept", "title": "Exp2_R100_pept dataset", "object": "Exp2_R100_pept", "file": "Exp2_R100_pept.RData", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Exp2_R100_prot", "title": "Exp2_R100_prot dataset", "object": "Exp2_R100_prot", "file": "Exp2_R100_prot.RData", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Exp2_R2_pept", "title": "Exp2_R2_pept dataset", "object": "Exp2_R2_pept", "file": "Exp2_R2_pept.RData", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false }, { "name": "Exp2_R2_prot", "title": "Exp2_R2_prot dataset", "object": "Exp2_R2_prot", "file": "Exp2_R2_prot.RData", "class": [ "MSnSet" ], "fields": [], "table": false, "tojson": false } ], "_help": [ { "page": "DAPARdata", "title": "Lists the datasets embebbedin DAPARdata", "topics": [ "DAPARdata" ] }, { "page": "Exp1_R2_pept", "title": "Exp1_R2_pept dataset", "topics": [ "Exp1_R2_pept" ] }, { "page": "Exp1_R2_prot", "title": "Exp1_R2_prot dataset", "topics": [ "Exp1_R2_prot" ] }, { "page": "Exp1_R25_pept", "title": "Exp1_R25_pept dataset", "topics": [ "Exp1_R25_pept" ] }, { "page": "Exp1_R25_prot", "title": "Exp1_R25_prot dataset", "topics": [ "Exp1_R25_prot" ] }, { "page": "Exp2_R10_pept", "title": "Exp2_R10_pept dataset", "topics": [ "Exp2_R10_pept" ] }, { "page": "Exp2_R10_prot", "title": "Exp2_R10_prot dataset", "topics": [ "Exp2_R10_prot" ] }, { "page": "Exp2_R100_pept", "title": "Exp2_R100_pept dataset", "topics": [ "Exp2_R100_pept" ] }, { "page": "Exp2_R100_prot", "title": "Exp2_R100_prot dataset", "topics": [ "Exp2_R100_prot" ] }, { "page": "Exp2_R2_pept", "title": "Exp2_R2_pept dataset", "topics": [ "Exp2_R2_pept" ] }, { "page": "Exp2_R2_prot", "title": "Exp2_R2_prot dataset", "topics": [ "Exp2_R2_prot" ] } ], "_rundeps": [ "abind", "affy", "affyio", "AnnotationFilter", "askpass", "base64enc", "BH", "Biobase", "BiocBaseUtils", "BiocGenerics", "biocmake", "BiocManager", "BiocParallel", "bslib", "cachem", "cli", "clue", "cluster", "codetools", "cpp11", "crosstalk", "curl", "data.table", "DelayedArray", "digest", "dir.expiry", "doParallel", "dplyr", "evaluate", "farver", "fastmap", "filelock", "fontawesome", "foreach", "formatR", "fs", "futile.logger", "futile.options", "generics", "GenomicRanges", "ggplot2", "glue", "gtable", "highr", "htmltools", "htmlwidgets", "httr", "igraph", "impute", "IRanges", "isoband", "iterators", "jquerylib", "jsonlite", "knitr", "labeling", "lambda.r", "later", "lattice", "lazyeval", "lifecycle", "limma", "magrittr", "MALDIquant", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "memoise", "MetaboCoreUtils", "mime", "MsCoreUtils", "MSnbase", "MultiAssayExperiment", "mzID", "mzR", "ncdf4", "openssl", "otel", "pcaMethods", "pillar", "pkgconfig", "plotly", "plyr", "preprocessCore", "promises", "ProtGenerics", "PSMatch", "PTMods", "purrr", "QFeatures", "R6", "rappdirs", "RColorBrewer", "Rcpp", "reshape2", "Rhdf5lib", "rlang", "rmarkdown", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "Seqinfo", "snow", "SparseArray", "Spectra", "statmod", "stringi", "stringr", "SummarizedExperiment", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "utf8", "vctrs", "viridisLite", "vsn", "withr", "xfun", "XML", "XVector", "yaml" ], "_vignettes": [ { "source": "dapardata.Rmd", "filename": "dapardata.html", "title": "DAPARdata", "author": "Samuel Wieczorek", "engine": "knitr::rmarkdown", "headings": [ "Session info" ], "created": "2022-06-17 12:21:24", "modified": "2023-10-27 04:07:41", "commits": 2 } ], "_score": 4.857332496431269, "_indexed": false, "_nocasepkg": "dapardata", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/DAPARdata", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.42.0", "date": "2026-10-10T11:16:04.000Z", "distro": "resolute", "commit": "4632a7170bd39b046d26988985212aefe9c94bd1", "fileid": "https://r2.ropensci.org/a4e33a881c4cc180bbbf660656fc041ff5f663a8c0c254c65ebe11e73edc614b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047207263" }, { "r": "4.6.1", "os": "linux", "version": "1.42.0", "date": "2026-10-10T11:15:06.000Z", "distro": "resolute", "commit": "4632a7170bd39b046d26988985212aefe9c94bd1", "fileid": "https://r2.ropensci.org/8b21e8e012d366254cc5a4d865967f3b277e358975c2b79261dd711acd0d2127", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047207263" } ] }