{ "_id": "6a1fdd6eb401979e73438697", "Package": "DART", "Type": "Package", "Title": "Denoising Algorithm based on Relevance network Topology", "Version": "1.60.0", "Date": "2015-05-23", "Author": "Yan Jiao, Katherine Lawler, Andrew E Teschendorff, Charles\nShijie Zheng", "Maintainer": "Charles Shijie Zheng ", "Description": "Denoising Algorithm based on Relevance network Topology\n(DART) is an algorithm designed to evaluate the consistency of\nprior information molecular signatures (e.g in-vitro\nperturbation expression signatures) in independent molecular\ndata (e.g gene expression data sets). If consistent, a pruning\nnetwork strategy is then used to infer the activation status of\nthe molecular signature in individual samples.", "License": "GPL-2", "LazyLoad": "yes", "biocViews": "GeneExpression, DifferentialExpression, GraphAndNetwork,\nPathways", "NeedsCompilation": "no", "Config/pak/sysreqs": "libglpk-dev libxml2-dev", "Repository": "https://bioc-release.r-universe.dev", "Date/Publication": "2026-04-28 12:36:13 UTC", "RemoteUrl": "https://github.com/bioc/DART", "RemoteRef": "RELEASE_3_23", "RemoteSha": "cc68a52d0d134937315456b17f955fb7e5ca1c36", "Packaged": { "Date": "2026-06-03 07:49:45 UTC", "User": "root" }, "MD5sum": "1ae915fe4cdf1410efe0500375e45343", "_user": "bioc-release", "_type": "src", "_file": "DART_1.60.0.tar.gz", "_fileid": "01fa7dbe1a9e3014bcffaf78cc0296ac373ea69645c07982d934391a3595d161", "_filesize": 2214152, "_sha256": "01fa7dbe1a9e3014bcffaf78cc0296ac373ea69645c07982d934391a3595d161", "_created": "2026-06-03T07:49:45.000Z", "_published": "2026-06-03T07:53:18.372Z", "_jobs": [ { "job": 79246719028, "time": 142, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7378722728" }, { "job": 79246719131, "time": 143, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7378723210" }, { "job": 79246719080, "time": 184, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7378736385" }, { "job": 79246719033, "time": 80, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7378702187" }, { "job": 79246719011, "time": 103, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7378710234" }, { "job": 79246273986, "time": 170, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7378674259" }, { "job": 79246719016, "time": 105, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7378710717" }, { "job": 79246719113, "time": 126, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7378717759" }, { "job": 79246719110, "time": 73, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7378699920" }, { "job": 79246719191, "time": 91, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7378706309" } ], "_bioccheck": { "error": 1, "warning": 3, "note": 11 }, "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871057374", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/DART", "_commit": { "id": "cc68a52d0d134937315456b17f955fb7e5ca1c36", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379773 }, "_maintainer": { "name": "Charles Shijie Zheng", "email": "charles_zheng@live.com", "login": "charles1992z", "description": "", "uuid": 8909899 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 2.10.0", "role": "Depends" }, { "package": "igraph", "version": ">= 0.6.0", "role": "Depends" }, { "package": "breastCancerVDX", "role": "Suggests" }, { "package": "breastCancerMAINZ", "role": "Suggests" }, { "package": "Biobase", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.61.0", "bioc": "3.24" }, { "branch": "release", "version": "1.60.0", "bioc": "3.23" } ], "_topics": [ "geneexpression", "differentialexpression", "graphandnetwork", "pathways" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 496, "source": "https://www.bioconductor.org/packages/stats/bioc/DART" }, "_mentions": 182, "_searchresults": 1, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/DART.html", "extra/NEWS.html", "extra/NEWS.txt", "manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_releases": [ { "version": "1.0", "date": "2011-05-26" }, { "version": "1.1", "date": "2011-08-25" } ], "_exports": [ "BuildRN", "DoDART", "DoDARTCLQ", "EvalConsNet", "PredActScore", "PruneNet" ], "_datasets": [ { "name": "dataDART", "title": "Example data for DART package", "object": "dataDART", "file": "dataDART.rda", "class": [ "list" ], "fields": [], "table": false, "tojson": true } ], "_help": [ { "page": "DART-package", "title": "Denoising Algorithm based on Relevance network Topology", "topics": [ "DART" ] }, { "page": "BuildRN", "title": "Builds the relevance correlation network", "topics": [ "BuildRN" ] }, { "page": "dataDART", "title": "Example data for DART package", "topics": [ "dataDART" ] }, { "page": "DoDART", "title": "Main function of DART", "topics": [ "DoDART" ] }, { "page": "DoDARTCLQ", "title": "Improved edition of DoDART", "topics": [ "DoDARTCLQ" ] }, { "page": "EvalConsNet", "title": "Evaluates the consistency of the inferred relevance correlation network with the correlations predicted by the model pathway signature.", "topics": [ "EvalConsNet" ] }, { "page": "PredActScore", "title": "Computes the DART activation score of the model signature in the samples of a data set.", "topics": [ "PredActScore" ] }, { "page": "PruneNet", "title": "Prunes relevance network to allow only edges that are consistent with the predictions of the model signature", "topics": [ "PruneNet" ] } ], "_rundeps": [ "cli", "cpp11", "glue", "igraph", "lattice", "lifecycle", "magrittr", "Matrix", "pkgconfig", "rlang", "vctrs" ], "_vignettes": [ { "source": "DART.Rnw", "filename": "DART.pdf", "title": "DART Tutorial", "engine": "utils::Sweave", "headings": [], "created": "2013-11-01 20:23:28", "modified": "2015-05-23 15:15:27", "commits": 3 } ], "_score": 4.301029995663981, "_indexed": false, "_nocasepkg": "dart", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/DART", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.60.0", "date": "2026-06-03T07:52:04.000Z", "distro": "noble", "commit": "cc68a52d0d134937315456b17f955fb7e5ca1c36", "fileid": "1c3e840e2ce4fc1b0126984e4d256c218d8c5e98c5511c55628b28d2212900dd", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871057374" }, { "r": "4.6.0", "os": "linux", "version": "1.60.0", "date": "2026-06-03T07:52:45.000Z", "distro": "noble", "commit": "cc68a52d0d134937315456b17f955fb7e5ca1c36", "fileid": "b230e0e449be57a74674e0e6ac82709af058910a293ffd1565f2f5c7b27cca79", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871057374" }, { "r": "4.5.3", "os": "mac", "version": "1.60.0", "date": "2026-06-03T07:51:06.000Z", "commit": "cc68a52d0d134937315456b17f955fb7e5ca1c36", "fileid": "40fb53d3ac7a2a02e3f484205ef6eda55bb0a47c9119d3f66b6df5702d0ec8f5", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871057374" }, { "r": "4.6.0", "os": "mac", "version": "1.60.0", "date": "2026-06-03T07:51:24.000Z", "commit": "cc68a52d0d134937315456b17f955fb7e5ca1c36", "fileid": "785cc2f0123a928fd3a02dea87707eb520494d104ebbec09667a8efcd966f881", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871057374" }, { "r": "4.6.0", "os": "wasm", "version": "1.60.0", "date": "2026-06-03T07:51:44.000Z", "commit": "cc68a52d0d134937315456b17f955fb7e5ca1c36", "fileid": "b4f4fbb9850ca848b55efa7207d53da2af13af6568b00bb3109e10028b9aec3b", "status": "success", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871057374" }, { "r": "4.7.0", "os": "win", "version": "1.60.0", "date": "2026-06-03T07:51:40.000Z", "commit": "cc68a52d0d134937315456b17f955fb7e5ca1c36", "fileid": "319f142430038d0819f752fc8faf28f54ebca87e83a1ecd8bcf99eda3b96a034", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871057374" }, { "r": "4.5.3", "os": "win", "version": "1.60.0", "date": "2026-06-03T07:50:48.000Z", "commit": "cc68a52d0d134937315456b17f955fb7e5ca1c36", "fileid": "029f60c0ae0cc298851b81595215cf4e355e70d93108dcc436457ba87a6bc01a", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871057374" }, { "r": "4.6.0", "os": "win", "version": "1.60.0", "date": "2026-06-03T07:51:03.000Z", "commit": "cc68a52d0d134937315456b17f955fb7e5ca1c36", "fileid": "72e6acdc7f349397b23bfc5fbaa6542f2fe116987cb0dbb16cff7821101d3da6", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/26871057374" } ] }