{
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  "Package": "DFP",
  "Type": "Package",
  "Title": "Gene Selection",
  "Version": "1.70.0",
  "Date": "2009-07-22",
  "Author": "R. Alvarez-Gonzalez, D. Glez-Pena, F. Diaz, F. Fdez-Riverola",
  "Maintainer": "Rodrigo Alvarez-Glez <rodrigo.djv@uvigo.es>",
  "Collate": "AllClasses.R show-methods.R DFP.R",
  "LazyLoad": "Yes",
  "Description": "This package provides a supervised technique able to\nidentify differentially expressed genes, based on the\nconstruction of \\emph{Fuzzy Patterns} (FPs). The Fuzzy Patterns\nare built by means of applying 3 Membership Functions to\ndiscretized gene expression values.",
  "License": "GPL-2",
  "biocViews": "Microarray, DifferentialExpression",
  "Repository": "https://bioc-release.r-universe.dev",
  "Date/Publication": "2026-04-28 12:33:08 UTC",
  "RemoteUrl": "https://github.com/bioc/DFP",
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  "NeedsCompilation": "no",
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    "User": "root"
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    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
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    "name": "Rodrigo Alvarez-Glez",
    "email": "rodrigo.djv@uvigo.es"
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  "_userbio": {
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    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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  "_realowner": "bioc",
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    "calculateFuzzyPatterns",
    "calculateMembershipFunctions",
    "discretizeExpressionValues",
    "discriminantFuzzyPattern",
    "plotDiscriminantFuzzyPattern",
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    "readCSV",
    "show",
    "showDiscreteValues",
    "showFuzzyPatterns"
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      "title": "A sample ExpressionSet object",
      "object": "rmadataset",
      "file": "rmadataset.rda",
      "class": [
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      ],
      "fields": [],
      "table": false,
      "tojson": false
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  ],
  "_help": [
    {
      "page": "DFP-package",
      "title": "DFP Package Overview",
      "topics": [
        "DFP-package",
        "DFP"
      ]
    },
    {
      "page": "calculateDiscriminantFuzzyPattern",
      "title": "Calculates the Discriminant Fuzzy Pattern to select significative genes",
      "topics": [
        "calculateDiscriminantFuzzyPattern"
      ]
    },
    {
      "page": "calculateFuzzyPatterns",
      "title": "Calculates a Fuzzy Pattern for each category of the samples",
      "topics": [
        "calculateFuzzyPatterns"
      ]
    },
    {
      "page": "calculateMembershipFunctions",
      "title": "Calculates Membership Functions",
      "topics": [
        "calculateMembershipFunctions"
      ]
    },
    {
      "page": "discretizeExpressionValues",
      "title": "Function to discretize gene expression data",
      "topics": [
        "discretizeExpressionValues"
      ]
    },
    {
      "page": "discriminantFuzzyPattern",
      "title": "Discriminant Fuzzy Pattern to filter genes",
      "topics": [
        "discriminantFuzzyPattern"
      ]
    },
    {
      "page": "ExpressionLevel-class",
      "title": "Class \"ExpressionLevel\"",
      "topics": [
        "ExpressionLevel-class",
        "show,ExpressionLevel-method"
      ]
    },
    {
      "page": "HighExpressionLevel-class",
      "title": "Class \"HighExpressionLevel\"",
      "topics": [
        "computeMembership,HighExpressionLevel-method",
        "HighExpressionLevel-class",
        "setValues,HighExpressionLevel-method"
      ]
    },
    {
      "page": "LowExpressionLevel-class",
      "title": "Class \"LowExpressionLevel\"",
      "topics": [
        "computeMembership,LowExpressionLevel-method",
        "LowExpressionLevel-class",
        "setValues,LowExpressionLevel-method"
      ]
    },
    {
      "page": "MediumExpressionLevel-class",
      "title": "Class \"MediumExpressionLevel\"",
      "topics": [
        "computeMembership,MediumExpressionLevel-method",
        "MediumExpressionLevel-class",
        "setValues,MediumExpressionLevel-method"
      ]
    },
    {
      "page": "plotDiscriminantFuzzyPattern",
      "title": "Plots the Discriminant Fuzzy Pattern of the relevant genes",
      "topics": [
        "plotDiscriminantFuzzyPattern"
      ]
    },
    {
      "page": "plotMembershipFunctions",
      "title": "Plots the Membership Functions (Low, Medium, High) used to discretize gene expression values",
      "topics": [
        "plotMembershipFunctions"
      ]
    },
    {
      "page": "readCSV",
      "title": "Creates an ExpressionSet with an AnnotatedDataFrame from CSV files",
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      ]
    },
    {
      "page": "rmadataset",
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      ]
    },
    {
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      "topics": [
        "show-methods"
      ]
    },
    {
      "page": "showDiscreteValues",
      "title": "Prints the labels to which the algorithm converts the gene expression values",
      "topics": [
        "showDiscreteValues"
      ]
    },
    {
      "page": "showFuzzyPatterns",
      "title": "Plots the Fuzzy Patterns corresponding to a class",
      "topics": [
        "showFuzzyPatterns"
      ]
    }
  ],
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  ],
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      "title": "Howto: Discriminat Fuzzy Pattern",
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      "created": "2013-11-01 20:04:44",
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