{ "_id": "6aca1fb6fe5cc25786e84f33", "Package": "DMRcatedata", "Type": "Package", "Title": "Data Package for DMRcate", "Version": "2.30.0", "Date": "2024-08-03", "Author": "Tim Peters", "Maintainer": "Tim Peters ", "Description": "This package contains 9 data objects supporting\nfunctionality and examples of the Bioconductor package DMRcate.", "License": "GPL-3", "biocViews": "ExperimentHub, ExperimentData, SNPData, Homo_sapiens_Data,\nMus_musculus_Data, SequencingData, MicroarrayData, Genome", "VignetteBuilder": "knitr", "Config/pak/sysreqs": "cmake make libbz2-dev libicu-dev libjpeg-dev\nliblzma-dev libpng-dev libuv1-dev libxml2-dev libssl-dev\nlibx11-dev xz-utils zlib1g-dev", "Repository": "Bioconductor 3.23", "Date/Publication": "2026-04-28 12:26:45 UTC", "RemoteUrl": "https://github.com/bioc/DMRcatedata", "RemoteRef": "RELEASE_3_23", "RemoteSha": "f69006f7c8e2a2d3e46de5038776d40f4963ccb9", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 11:11:02 UTC", "User": "root" }, "_user": "bioc-release", "_type": "src", "_file": "DMRcatedata_2.30.0.tar.gz", "_fileid": "https://r2.ropensci.org/c13df3f40127c01df5262d523b1ee15c49c91cb35d5dc878ef7c111f22a5a4d7", "_filesize": 221262, "_sha256": "c13df3f40127c01df5262d523b1ee15c49c91cb35d5dc878ef7c111f22a5a4d7", "_expires": "2027-01-18T11:21:25.000Z", "_created": "2026-10-10T11:11:02.000Z", "_published": "2026-10-10T11:21:26.788Z", "_buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047010521", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 2, "warning": 1, "note": 7 }, "_upstream": "https://github.com/bioc/DMRcatedata", "_commit": { "id": "f69006f7c8e2a2d3e46de5038776d40f4963ccb9", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to even y prior to creation of RELEASE_3_23 branch\n", "time": 1777379205 }, "_maintainer": { "name": "Tim Peters", "email": "t.peters@garvan.org.au", "login": "timpeters82", "description": "", "uuid": 5061381 }, "_distro": "resolute", "_jobs": [ { "job": 114200054830, "time": 397, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11668850892" }, { "job": 114200054867, "time": 544, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "11668557247" }, { "job": 114200054875, "time": 551, "config": "linux-release-x86_64", "r": "4.6.1", "check": "OK", "artifact": "11667998043" }, { "job": 114198507548, "time": 541, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11668231795" } ], "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "ExperimentHub", "role": "Depends" }, { "package": "GenomicFeatures", "role": "Imports" }, { "package": "Gviz", "role": "Imports" }, { "package": "readxl", "role": "Imports" }, { "package": "plyr", "role": "Imports" }, { "package": "rtracklayer", "role": "Imports" }, { "package": "IlluminaHumanMethylation450kanno.ilmn12.hg19", "role": "Imports" }, { "package": "IlluminaHumanMethylationEPICanno.ilm10b4.hg19", "role": "Imports" }, { "package": "knitr", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": false, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "2.31.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "2.30.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimenthub", "experimentdata", "snpdata", "homo_sapiens_data", "mus_musculus_data", "sequencingdata", "microarraydata", "genome", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 12, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/DMRcatedata.html", "extra/manual.pdf", "extra/NEWS.html", "extra/NEWS.txt" ], "_cranurl": false, "_exports": [], "_help": [ { "page": "DMRcatedata-package", "title": "Dataset to use with the DMRcate pipeline", "topics": [ "DMRcatedata-package", "DMRcatedata" ] }, { "page": "ALLbetas", "title": "EPICv2 beta values for DMR calling", "topics": [ "ALLbetas" ] }, { "page": "crosshyb", "title": "Potentially cross-hybridising Illumina probes", "topics": [ "crosshyb" ] }, { "page": "epicv2snps", "title": "SNP information for EPICv2 Illumina probes", "topics": [ "epicv2snps" ] }, { "page": "hg19.generanges", "title": "Start and stop positions of all genes in hg19", "topics": [ "hg19.generanges" ] }, { "page": "hg19.grt", "title": "GeneRegionTrack for hg19", "topics": [ "hg19.grt" ] }, { "page": "hg38.generanges", "title": "Start and stop positions of all genes in hg38", "topics": [ "hg38.generanges" ] }, { "page": "hg38.grt", "title": "GeneRegionTrack for hg38", "topics": [ "hg38.grt" ] }, { "page": "mm10.generanges", "title": "Start and stop positions of all genes in mm10", "topics": [ "mm10.generanges" ] }, { "page": "mm10.grt", "title": "GeneRegionTrack for mm10", "topics": [ "mm10.grt" ] }, { "page": "snpsall", "title": "SNP information for EPICv1 and 450K Illumina probes", "topics": [ "snpsall" ] }, { "page": "XY.probes", "title": "Sex chromosome Illumina probes", "topics": [ "XY.probes" ] } ], "_rundeps": [ "abind", "annotate", "AnnotationDbi", "AnnotationFilter", "AnnotationHub", "askpass", "backports", "base64", "base64enc", "beanplot", "BH", "Biobase", "BiocBaseUtils", "BiocFileCache", "BiocGenerics", "BiocIO", "biocmake", "BiocManager", "BiocParallel", "BiocVersion", "biomaRt", "Biostrings", "biovizBase", "bit", "bit64", "bitops", "blob", "BSgenome", "bslib", "bumphunter", "cachem", "cellranger", "checkmate", "cigarillo", "cli", "clipr", "cluster", "codetools", "colorspace", "cpp11", "crayon", "curl", "data.table", "DBI", "dbplyr", "DelayedArray", "DelayedMatrixStats", "deldir", "dichromat", "digest", "dir.expiry", "doRNG", "dplyr", "ensembldb", "evaluate", "ExperimentHub", "farver", "fastmap", "filelock", "fontawesome", "foreach", "foreign", "formatR", "Formula", "fs", "futile.logger", "futile.options", "genefilter", "generics", "GenomeInfoDb", "GenomicAlignments", "GenomicFeatures", "GenomicRanges", "GEOquery", "ggplot2", "glue", "gridExtra", "gtable", "Gviz", "h5mread", "HDF5Array", "highr", "Hmisc", "hms", "htmlTable", "htmltools", "htmlwidgets", "httr", "httr2", "IlluminaHumanMethylation450kanno.ilmn12.hg19", "IlluminaHumanMethylationEPICanno.ilm10b4.hg19", "illuminaio", "interp", "IRanges", "isoband", "iterators", "jpeg", "jquerylib", "jsonlite", "KEGGREST", "knitr", "labeling", "lambda.r", "lattice", "latticeExtra", "lazyeval", "lifecycle", "limma", "locfit", "magrittr", "MASS", "Matrix", "MatrixGenerics", "matrixStats", "mclust", "memoise", "mime", "minfi", "multtest", "nlme", "nnet", "nor1mix", "openssl", "pillar", "pkgconfig", "plyr", "png", "preprocessCore", "prettyunits", "progress", "ProtGenerics", "purrr", "quadprog", "R.methodsS3", "R.oo", "R.utils", "R6", "rappdirs", "RColorBrewer", "Rcpp", "RcppEigen", "RCurl", "readr", "readxl", "rematch", "rentrez", "reshape", "restfulr", "rhdf5", "rhdf5filters", "Rhdf5lib", "Rhtslib", "rjson", "rlang", "rmarkdown", "rngtools", "rpart", "Rsamtools", "RSQLite", "rstudioapi", "rtracklayer", "rvest", "S4Arrays", "S4Vectors", "S7", "sass", "scales", "scrime", "selectr", "Seqinfo", "siggenes", "snow", "SparseArray", "sparseMatrixStats", "statmod", "stringi", "stringr", "SummarizedExperiment", "survival", "sys", "tibble", "tidyr", "tidyselect", "tinytex", "tzdb", "UCSC.utils", "utf8", "VariantAnnotation", "vctrs", "viridisLite", "vroom", "withr", "xfun", "XML", "xml2", "xtable", "XVector", "yaml" ], "_vignettes": [ { "source": "DMRcatedata.Rnw", "filename": "DMRcatedata.pdf", "title": "The DMRcate package user's guide", "engine": "knitr::knitr", "headings": [], "created": "2019-09-12 06:52:19", "modified": "2024-03-08 06:59:47", "commits": 6 } ], "_score": 3.3802112417116064, "_indexed": false, "_nocasepkg": "dmrcatedata", "_universes": [ "bioc-release" ], "_indexurl": "https://bioc.r-universe.dev/DMRcatedata", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "2.30.0", "date": "2026-10-10T11:18:22.000Z", "distro": "resolute", "commit": "f69006f7c8e2a2d3e46de5038776d40f4963ccb9", "fileid": "https://r2.ropensci.org/7caa8e2bd32105ecd2c0a2dee61579107277aa29e8c1f3d7d21e6bbf68d5bb93", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047010521" }, { "r": "4.6.1", "os": "linux", "version": "2.30.0", "date": "2026-10-10T11:18:29.000Z", "distro": "resolute", "commit": "f69006f7c8e2a2d3e46de5038776d40f4963ccb9", "fileid": "https://r2.ropensci.org/b6565948ebabdff9e9d9ef2a991327715edcd6c9c9fcc42b0a12ca6868e59d81", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc-release/actions/runs/38047010521" } ] }